c55217644b88c1bada222c243c10726a *DESCRIPTION
26dae35eb1431cc411e5cf37a463c688 *NAMESPACE
457a0257ee314aa132a190a7199c663c *NEWS.md
5b5eeaa95aef437b81cfd1d7fc9650a3 *R/StatModel-methods.R
9386f7d45da0c7e26ac57551b7aeee13 *R/accessors.R
ac2ed5d3e2e51fb038ee6fdf8896a215 *R/allGenerics.R
555591fd6a0a28547342b8afde10cf5a *R/calculateNormFactors.R
4d097ff88cb626ad2f54e41e1285467f *R/collect-plot-results.R
72adbfbd632223866bf6569b3f8825bd *R/data.R
aeb9aa680ce662e694025edcc16df4ad *R/hypothesisTest-methods.R
b6bdd7bb35c3d8a83b38739728fc24e3 *R/msqrob-framework.R
fd8680d39aefa47c6edeeb690ea914c1 *R/msqrob-methods.R
8dc903b58a8fccb8415ca2a2380c7e2b *R/msqrob-utils.R
0345d456b8dc9b09a51a4a8a17a338a0 *R/msqrob.R
8a44627640ada409edfa8d9ba804e4f2 *R/msqrobAggregate.R
65e0ed1c02a495f2a87d391654b5219b *R/msqrobHurdle-methods.R
9f36f9a69a78b99c030fc2a2b654519f *R/msqrobQB.R
9de2e4454fc02ed961319cea718a003a *R/topFeatures.R
3af2ce711c6589723fa1abfb1c4bbae5 *README.md
a1251aac4aedf25b8c2871ef16e7e10d *build/vignette.rds
259bac3cb0c6e604e38b3ba5a8d36e00 *data/pe.RData
407d90f764e47e3c660ac2ed9eaa9db0 *inst/CITATION
65a34dfde46e0fcb2131a676882454fd *inst/doc/cptac.R
17f823054e38badf17dccd541e9b4a8a *inst/doc/cptac.Rmd
d7c2d8d755eae664883f68605b3953b8 *inst/doc/cptac.html
330f25c3c5078e51e9088633eb34c50c *inst/doc/staesSpikein-DIA-NN.R
e9f9cac61ef8db2a11348dde07cac866 *inst/doc/staesSpikein-DIA-NN.Rmd
f76a364682c7bbc849f01a84b827a09b *inst/doc/staesSpikein-DIA-NN.html
b45086c8add7fe8a1205ce2db9b7dff6 *inst/doc/staesSpikein-spectronaut.R
b3ecb2a1a7eba88dcd4a5859546cba64 *inst/doc/staesSpikein-spectronaut.Rmd
8f0423cbbcbb2deddae1420c543672c2 *inst/doc/staesSpikein-spectronaut.html
95ae1ac21395c6a49ef8903f979a036a *man/StatModel.Rd
4c30c652bc8bd305fd2567efa3c78855 *man/createPairwiseContrasts.Rd
232e7d80d3c54bce396642b9e7a6a7d2 *man/data.Rd
0d639b7d089d0a589795706b8e9e13dc *man/dot-computeNfLogMedian.Rd
40f33f1910303af5525b828113b24d45 *man/dot-computeNfLogMedianOfRatios.Rd
5f197edc814d917efc030b3db390078d *man/hypothesisTest.Rd
c418df8a6d96cb0bfaa6562ec9c67601 *man/makeContrast.Rd
4d2dcfb9131ab71b2010c55d23510962 *man/msqrob.Rd
156285da6673ac9668271a54934d8bd6 *man/msqrobAggregate.Rd
6f0b1e968778c96ffb25ca50e030658f *man/msqrobCollect.Rd
05f68607dd84fff9ec03e36b4ffa1a57 *man/msqrobGlm.Rd
57ede0732e1dd297119768486705777d *man/msqrobHurdle.Rd
520e040300459a56300fc76b13b39c01 *man/msqrobLm.Rd
7a1049aec03696edc6c187ac3ed435dc *man/msqrobLmer.Rd
41d0cb9805d75428c07f9951ab78d5e8 *man/msqrobQB.Rd
beb8f65066696e6e95575c6dde7335f0 *man/nfLogMedian.Rd
93f2fb9526f9a0d2ea738e8f7a84792f *man/nfLogMedianOfRatios.Rd
1a1a744e7e53cb4dedb9c4f3ac01f7b6 *man/plotVolcano.Rd
21dd66b4af50c9f5132dee00f2166de9 *man/smallestUniqueGroups.Rd
7be3478ca9a90bd8aff121608e9a18ff *man/statModelAccessors.Rd
fd8cf7b39e0e98e0549a09ec84e727dd *man/statModelMethods.Rd
d6e72629eb9b14d22f035614612dd103 *man/topTable.Rd
c0af4e9c702b2e02d302cff104c5cd50 *tests/testthat.R
f194480c555f4a5c6f0a623f9a06c2c6 *tests/testthat/test_StatModel.R
b5ae15da772b5d96eb84c9bef42178f2 *tests/testthat/test_msqrob.R
17f823054e38badf17dccd541e9b4a8a *vignettes/cptac.Rmd
4b8fab1c3e51bfd1ae29526cd1e42108 *vignettes/msqrob2.bib
e9f9cac61ef8db2a11348dde07cac866 *vignettes/staesSpikein-DIA-NN.Rmd
b3ecb2a1a7eba88dcd4a5859546cba64 *vignettes/staesSpikein-spectronaut.Rmd
