041ce8232f1869151610a6a692d52f17 *DESCRIPTION
5bebb60ddb446fc76c7d11160310f019 *LICENSE
f3bd0835c94a623cacb46b0b3160551e *NAMESPACE
2b53e66889a711b634f9941dea199416 *NEWS.md
a9a8f5b0596098bd3e12ec2c3e432ded *R/ancestry_smmat.R
12023503618dc1681d8363bd0dbf3dcb *R/ancestry_split.R
6f7678431010ac426d4c84a6516dd3ce *R/checks.R
af7a62c6fabe9103947b25e696122701 *R/lantern-package.R
ad4fb18ad7274e43ef1103759e5f5ea6 *R/utils.R
b3b155d038085bf76d780dad2c7853e7 *R/write_ancestry_gds.R
56480bfadbc73aba211d517dc9453ad2 *README.md
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
4c7873306e9a00a9aaa38f8fd677aac7 *build/vignette.rds
5d3aff911b4d58c03253f0c15b3bfa36 *inst/CITATION
fede27795f7e640539004b11de4c5cb1 *inst/doc/lantern.R
e1444aaff7df9cdd241acce8ae748433 *inst/doc/lantern.Rmd
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08fc2b9bd60b7cdbd3c4812e6940cb7b *inst/doc/real-data-chr19.Rmd
f9b531316bf4ad8bcf33f3ca1bc1a921 *inst/doc/real-data-chr19.html
8a4dc40455b9f47d8c65fed088e2703e *inst/doc/split-intuition.R
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2e61a4888e34701744a57ceefef005c4 *inst/doc/split-intuition.html
6783d6b583ab9ec9779e9d496da49121 *inst/doc/toy-vcf-msp-example.R
ee9474534408a8d67daaea1b29a38643 *inst/doc/toy-vcf-msp-example.Rmd
1b160df2b3052291e0e2c21abd5b0a11 *inst/doc/toy-vcf-msp-example.html
10c257e290ca93a1a57387b806f86242 *inst/extdata/toy.msp.tsv
4110b4b7e5e63a82b6051b08c3fdf6fe *inst/extdata/toy.vcf.gz
27535ca1d536bbcbc02ac856a2dcdcc7 *inst/extdata/toy_ancestry.bed
500e90dbf9d2074438b2790aacd5288b *inst/extdata/toy_ancestry.bim
7761f5ea19acfaf09ddc5af6aa09e519 *inst/extdata/toy_ancestry.fam
eb9f4567d329a74be8f668ad0ad58de3 *inst/extdata/toy_genes.tsv
e13b523de677d08207cc88b0ad9469ea *inst/extdata/toy_pheno.tsv
f82390d24849c7d9323a859f4c96a76f *inst/scripts/make_toy_data.R
f1721c13aafcb22aaf17f87d009515db *man/ancestry_smmat.Rd
1b353daf15b396088ea8a1ec5b182432 *man/ancestry_split.Rd
087eb1f03ff0c41b7d29000666c1d0aa *man/ancestry_split_dosage.Rd
4de3b322a10c299726ab938cc84ddf5d *man/ancestry_split_phased.Rd
506ad5746c43fb97754d22951de9e0fe *man/cauchy_combine.Rd
860f2cb3bb596484ce00bb38fc0c6031 *man/count_ancestry_codes.Rd
7556bf70322f0420c52ab195a04c3133 *man/dot-compute_gene_weights.Rd
9df7aa16614c3a50557e2bbc3f2fb711 *man/dot-parse_msp.Rd
c21cccab75071daa54343489e878b13f *man/dot-parse_phased_gt_matrix.Rd
8ae2c032292318e5dd5a9bbe52c48363 *man/dot-parse_vcf_msp_common.Rd
93e16e0d9a57994b17ee64f3356cc572 *man/dot-resolve_vcf_contig.Rd
9a88a48fb42882f6db0999db3c23b19a *man/dot-vcf_read_gt.Rd
16393086c09fe19a465a91d9bedf9464 *man/dot-vcf_reader.Rd
de61947fca4c1ade432962e3433838bc *man/dot-vcf_sample_ids.Rd
f79cf4960eaaa0fd6ec268a9a4477fb0 *man/figures/logo.png
ac0c1485cd4b66463c11d0bf84010753 *man/lantern-package.Rd
133e9526cc19c0e51c9be666ae5bd31f *man/read_bed_file.Rd
dc16fe0ea27e305c5e56dd2239f3ea4d *man/split_diploid.Rd
46f12a9ab478d51e7b480f69342434bf *man/split_diploid_multi.Rd
f8cfdee2642a97b4c2a82cd3f29dd7ed *man/split_haplotype.Rd
591bf4504b4cd92e47a301f9ace071c5 *man/split_haplotype_multi.Rd
4a8accd25bbd8b4901df6ceeef7a3103 *man/write_ancestry_gds.Rd
34c25fd4f31010011afb0e6b2185dc8e *man/write_dosage_gds.Rd
095ac93ffa622cfd45d7acd47ddfed37 *src/Makevars
dd1a96a839f48ecb34960047d774a40c *src/ancestry.c
677fb7d2ad7c387b00a17fc97078db2c *src/ancestry.h
23aa58306ea0592770a941ad4b3b0e35 *src/init.c
6bbcdfa1547a88bc85b2425600c617ca *tests/testthat.R
b9c3bdda5c619970220b7f54728f3d8f *tests/testthat/test-ancestry_smmat.R
65d07c6f23d9fb5044313629ca7387fe *tests/testthat/test-ancestry_split.R
5a778d8e01afeb3f9f65d32380e72ec8 *tests/testthat/test-checks.R
5ab80ad38333a96380e650e23cc2e0ca *tests/testthat/test-shrinkage.R
5af56d7b875ed6eeaeb74ffef562d1ac *tests/testthat/test-utils.R
0e5b6e3f16381e8cdbb453085d779a48 *tests/testthat/test-vcf_reader.R
7283aa5388f7f4c31d18073055b4ab3b *tests/testthat/test-write_ancestry_gds.R
0e488c54bd0c9948b5c41297a9d8bc72 *vignettes/figures/haplotype-ambiguity.svg
b4ae3018a27b512e18471bba541193c0 *vignettes/figures/power.svg
0860cc9a185420bdb07ee69ab6d8b37f *vignettes/figures/switch-error.svg
e1444aaff7df9cdd241acce8ae748433 *vignettes/lantern.Rmd
08fc2b9bd60b7cdbd3c4812e6940cb7b *vignettes/real-data-chr19.Rmd
c27c377bce29b35f5c091e13b99f9589 *vignettes/split-intuition.Rmd
ee9474534408a8d67daaea1b29a38643 *vignettes/toy-vcf-msp-example.Rmd
