eccc753e7ae65cd1d56cbbab58642092 *DESCRIPTION
273eb9429f4fbebc83b3773695dad1fb *LICENSE
b383c52bc9322c3e1598c9813183ff5e *NAMESPACE
0b83adcf9e0a88ed05e44f14e9bee00a *NEWS.md
e4a07d9f926fa31063aa0321d2f37755 *R/CTDFile.R
ad47f464bbaf41c518cc477bed589550 *R/as_genesets_CTD.R
4a04dbc435dc6232cbe90312e3bf0b98 *R/cache.R
06fa58a26a8e0bef8be8b35922740b87 *R/camera.R
fcdda197cf3f4dcb4b403246e0ff33cf *R/ctdR-package.R
9ac0ea46a51969260d4de65484e433c3 *R/ctd_cache.R
2c5bbf7611e67b98d9636e6b2a9f0b77 *R/enrichment_analysis.R
7d5b02d9e68e03c92ff733d666d98a39 *R/gsea.R
ad17ac3314bc14729a9ec0eeff886bcd *R/gsva.R
16cbcf92d5b92bede809054684e865b6 *R/import_CTD.R
e016915e6ca88c432c778b62a98acc18 *R/ora.R
9c53fa0008b7fda126d575721c84f8e6 *R/plot_CTD.R
ceda3a17b7b2988386d46b6886121019 *R/provenance.R
f8038e83bfc001d98ba193b4119f2079 *R/source.R
daa9b1cd6ee615908965679a5e76faf1 *R/utils-input.R
21c9401b8c07f38d762ade4612fc4ffe *build/partial.rdb
5ada733b8e397c142787d4c654b955f0 *build/vignette.rds
1441f2f87e567d0b3cd6e138e4d34a15 *inst/CITATION
1dfc7620c8f101fb17553b846c6a1ec1 *inst/doc/ctdR.R
9912ba79c814b0061bfca64f54812df2 *inst/doc/ctdR.Rmd
0e3edb1fd5073383cf13da61853354b6 *inst/doc/ctdR.html
bdfc614e8324db33a304846aa3211e4f *inst/doc/replication_yang2024.R
6fec58f078208a076bd3e8fd9aded8b3 *inst/doc/replication_yang2024.Rmd
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896994d507ae79185cfcf7b4642d1b7d *inst/extdata/CTD_chem_gene_ixns_sample.csv
9c1cbe8ec64d3117d7f97aebd9fa5f52 *inst/extdata/GSE311566_subset.rds
2a5970b1bf9174f670296b6450e7e7a2 *inst/extdata/README.md
55923b2952cfd2fc13c612e9000c224a *inst/extdata/iulini2026/README.md
93e4e5298460935350c737b41cba23d8 *inst/extdata/iulini2026/iulini2026_ipa_dex_female.tsv
749c338f2ba83515116baa71364341f6 *inst/extdata/yang2024/README.md
d600bf5776e75de1ff7ce3b36168a17c *inst/extdata/yang2024/yang2024_comparison.tsv
98aee98c5ea00e8408dd4cd970be6384 *inst/extdata/yang2024/yang2024_discovery_summary.tsv
257b50a95851c73c9711769f58ca1d3b *inst/extdata/yang2024/yang2024_discovery_top30.tsv
a1923295a19a66a1d0527ae440fa39df *inst/extdata/yang2024/yang2024_discovery_yang_chemicals.tsv
7c24c26e0a6eee7b16b2638eda949057 *inst/extdata/yang2024/yang2024_genes.tsv
166001196a88ed5cc3cbcfc8f1ce029e *inst/extdata/yang2024/yang2024_replication.tsv
ec38c2d6151b507187955b70e58ddbba *inst/scripts/example_gse311566_full_pipeline.R
64d41e2f7cf8630b23d31823e552e472 *inst/scripts/make_gse311566_subset.R
a73a3e8b67d6bbf2e0c536ed855f0a7e *inst/scripts/replicate_yang2024.R
07821ee69caac996acec1cab16593e3b *man/CTDFile.Rd
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4f74be5a85f0722cfdb43664e4a77c2f *man/ctd_provenance.Rd
7cd7ebe39820a09350e1dff6adc198b5 *man/dot-annotate_genes.Rd
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2e2c0e1f064d31737b5eacbc536cd511 *man/dot-ctd_bfc.Rd
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53d6fc25f4f2ac0453797fe3101a249c *man/dot-run_gsea.Rd
0fd6e7f963474dfd081868e05f2f95be *man/dot-run_gsva.Rd
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dcfaf0a7300aa4fb48a444498152a904 *man/dot-save_ctd_cache.Rd
58f529bf448dc2ccf0a5c0bc11e7455c *man/dot-select_se_assay.Rd
f0a95263d8fd7341e9c531a5b10d3944 *man/dot-to_symbols.Rd
0b45e8e8b40cd4a59d3ddffcc566ac85 *man/dot-validate_enrichment_args.Rd
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59ab2b9c89c41ae18e031649494a25e9 *man/dot-validate_expr_rownames.Rd
769b23bbee91f3744fd2b6601338a14d *man/enrichment_CTD.Rd
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d2d65ef4a32458f2d6c585c024a61997 *man/ora.Rd
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261eefeb22d416d3c0c14d68b234c487 *man/utils-input.Rd
e8163e009d91d354e4cb0cf3adf1b800 *tests/testthat.R
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298db8b9f9b9e6d1e2b7feb5c6f8da7b *tests/testthat/test-e2e-gse311566.R
38efa8175fb176e6c47da191f0778c2d *tests/testthat/test-enrichment_CTD.R
7e220fd5d0984876bfc80ec78bd9bf62 *tests/testthat/test-enrichment_CTD_integration.R
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83386f55526928525c03c702a745a465 *tests/testthat/test-gsva.R
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7dd3dfeaf261317c7b69a8be8cc145fd *tests/testthat/test-ora.R
743fcd148daab28c58a090ede7959c98 *tests/testthat/test-plot_CTD.R
5dd87229420160236b94fbed4c262253 *tests/testthat/test-provenance.R
afe9436cd5e44b520b9ec196883f1828 *tests/testthat/test-source.R
c2c312035496ba687d5517420cd75189 *tests/testthat/test-summarizedexperiment.R
350424c781ef35aeec5350ed0a171c89 *tests/testthat/test-utils-input.R
9912ba79c814b0061bfca64f54812df2 *vignettes/ctdR.Rmd
6fec58f078208a076bd3e8fd9aded8b3 *vignettes/replication_yang2024.Rmd
