# Generated by roxygen2: do not edit by hand

export(DESeq2.createRmd)
export(DESeq2.length.createRmd)
export(DSS.createRmd)
export(EBSeq.createRmd)
export(NBPSeq.createRmd)
export(NOISeq.prenorm.createRmd)
export(TCC.createRmd)
export(checkDataObject)
export(checkTableConsistency)
export(check_compData)
export(check_compData_results)
export(check_phyloCompData)
export(compData)
export(convertListTocompData)
export(convertListTophyloCompData)
export(convertcompDataToList)
export(convertphyloCompDataToList)
export(edgeR.GLM.createRmd)
export(edgeR.exact.createRmd)
export(generateCodeHTMLs)
export(generateSyntheticData)
export(lengthNorm.limma.createRmd)
export(lengthNorm.sva.limma.createRmd)
export(listcreateRmd)
export(logcpm.limma.createRmd)
export(phyloCompData)
export(phylolm.createRmd)
export(runComparison)
export(runComparisonGUI)
export(runComparisonShiny)
export(runDiffExp)
export(sqrtcpm.limma.createRmd)
export(summarizeSyntheticDataSet)
export(ttest.createRmd)
export(voom.limma.createRmd)
export(voom.ttest.createRmd)
exportClasses(compData)
exportClasses(phyloCompData)
import(KernSmooth)
import(MASS)
import(ROCR)
import(caTools)
import(edgeR)
import(ggplot2)
import(gplots)
import(grid)
import(gtools)
import(knitr)
import(lattice)
import(limma)
import(markdown)
import(methods)
import(rmarkdown)
import(sm)
import(stringr)
import(vioplot)
importFrom(grDevices,heat.colors)
importFrom(graphics,
  axis,
  legend,
  lines,
  par,
  title
)
importFrom(shiny,
  actionButton,
  checkboxGroupInput,
  fluidRow,
  htmlOutput,
  incProgress,
  numericInput,
  observeEvent,
  reactive,
  renderText,
  renderUI,
  selectInput,
  shinyApp,
  stopApp,
  uiOutput,
  withProgress
)
importFrom(shinydashboard,
  box,
  dashboardBody,
  dashboardHeader,
  dashboardPage,
  dashboardSidebar
)
importFrom(statip,mfv)
importFrom(stats,
  as.dist,
  cor,
  hclust,
  lm,
  loess,
  median,
  na.omit,
  pf,
  predict,
  pt,
  qf,
  qt,
  rexp,
  rnbinom,
  rnorm,
  rpois,
  runif,
  sd
)
importFrom(utils,
  head,
  packageVersion
)
