794bba3514e9929924c1bbde798fec90 *DESCRIPTION
473c8f94f55d59971858f58f73f923e3 *LICENSE
14ec13c236c618461dd05885c2b91513 *NAMESPACE
cf6160e00c94de425a356f6f2d250425 *NEWS.md
04b894b335bfec9d612d1b6c9007e8b4 *R/BLADE_deconvolution.R
0f7bd03841667f6be9ee61b762ba61c5 *R/EcotypeDiscovery.R
295e32b0c01331fcbf586ad84e612c8d *R/EcotypeRetrieval.R
58198d46fd7a1b81124db4ad5416df19 *R/Refinement.R
034bbee4d164206026275d7ad75e1158 *R/StateDiscovery.R
e84c6de2b02d67c7d488523b01e3b798 *R/StateRetrieval.R
7676ee25bde18e9c3cff506613a05db8 *R/StatescopeR-package.R
04bbf59228b4d2488deb116addb7a248 *R/basilisk.R
89f71d7e358a069da0517df8d571ad10 *R/concatenate_statescores.R
28471c2ae3d9e278d98f8fddcc42e14b *R/create_signature.R
38f52fb7f526e90b21dae2fcf44d37d1 *R/fetch_signature.R
cb429821f361416f4a6e92f6e1e434c5 *R/gather_true_fractions.R
cd8269a8a1f1d1ce2e7b30bdf1a741fe *R/plot_functions.R
e829769c51eeb2f8514c335de60e70c9 *R/select_genes.R
0cf209d01d9ce7d853399f1d1e3ca791 *README.md
a5885f32cb66e8a21badfc3117876e5d *build/vignette.rds
357dd961172bf0191dac7d051404333f *configure
3ac2a0c78b45a3a0204268ad4ef4796a *configure.win
d9bd17c95e29a615bc85de979a45bd7e *inst/CITATION
00fd969a75b5fc450097c03f9a866110 *inst/doc/StatescopeR.R
a6ad5b01c8457a543ff3c44da1571cbc *inst/doc/StatescopeR.Rmd
5431c4d4a085900529fdad3f185aef9a *inst/doc/StatescopeR.html
f157feea11e1dc3594d2f37790b4b20d *inst/extdata/example_Statescope_Deconvolved.RData
d823058d0053286db15e6738a02d460b *inst/extdata/example_Statescope_EcotypeDiscovered.RData
3ee72d102399b54c0ee34e955d979522 *inst/extdata/example_Statescope_Refined.RData
61e61c008a6c4b1e8972bbcf62135e7a *inst/extdata/example_Statescope_StateDiscovered.RData
f81dcee2c742e5098a9950fa7c74c2d1 *inst/extdata/example_prior.RData
4d1430e34ef4f7e4de5feec63eb09d8f *inst/extdata/example_selected_genes.RData
5e868874b02cd4b1a1a255c4d93952b8 *inst/extdata/example_signature.RData
33c38114a54ecaea91c858f921f16cfb *inst/extdata/example_true_fractions.RData
985f218b2debdd5520e925ca52456b92 *inst/python/BLADE.py
3a0163b257664e4ce220f0d012eabdc9 *inst/python/__pycache__/OncoBLADE.cpython-311.pyc
b770d42ffa7f795c94f8452576db4270 *inst/python/__pycache__/OncoBLADE.cpython-312.pyc
f29281a814ed1ff4bc5b235d6ecbedc2 *inst/python/cNMF_functions.py
5fdc29580e10048b2d3f0ee6551d5e35 *inst/python/cNMF_helper_functions.py
f6c542701f368c4826ee82fd0fc0f857 *inst/scripts/example_Statescope.R
cdd48e5dfd145fbbc4ed15ee43d371a8 *man/BLADE_deconvolution.Rd
0b0d969522c6f70f5fa60f9b0c42fa7d *man/EcotypeDiscovery.Rd
8610d411d44ddeba2d313de5fe9ba38b *man/EcotypeRetrieval.Rd
e03eb1b745a8e5622b1026f01b251f50 *man/Refinement.Rd
7655e953a5d67c850cf3433cabda5f1b *man/StateDiscovery.Rd
be8b846901d34f6cdce6e0c7a174fde7 *man/StateRetrieval.Rd
33d21a9983967ecf3942b8c40ec7f7de *man/StatescopeR-package.Rd
05512788022ae7a1787373573661d644 *man/barplot_stateloadings.Rd
d5c2bb4f060236767cc92b82e7a490b0 *man/concatenate_statescores.Rd
890cb15dc7c06170368d4e87b1458795 *man/create_signature.Rd
ab51a1a74e0dc347999a806ec8eb9b26 *man/fetch_signature.Rd
6807fe8d62e330842b2440457db50d10 *man/fraction_eval.Rd
b3a10cca8910c4963b62be631c88f0f5 *man/fraction_heatmap.Rd
4b11ab22972157cb4f47c064a3968e47 *man/gather_true_fractions.Rd
b3284196cf2af042c84e696f5c9df9af *man/select_genes.Rd
5c6fbd9e7ff72e0e293a46b83375b87c *man/statescope.Rd
f60f15a9561d2ce93415b68fe3304168 *tests/testthat.R
682610786ac765518cf7c3cccba44ab9 *tests/testthat/test-BLADE_deconvolution.R
a6ad5b01c8457a543ff3c44da1571cbc *vignettes/StatescopeR.Rmd
