0529833f8c88dd81281dc82af96af4c8 *DESCRIPTION
ef540fb05977360dd6da8a4b4482f0f1 *NAMESPACE
5c6192c429592d0ed4b8d87687624bfa *NEWS.md
ac3b21d078fa4e3c49bc1059d19de290 *R/AllClasses.R
ba42af5223af4ffc1507062098eb5ad0 *R/SpaNorm.R
8c49c8ee29005bd7cfbfbd30d7c746ca *R/checkers.R
52e02a4d03ecad00fb942243e915b954 *R/fastSizeFactors.R
9923db8db1cb222e98780923d49138ae *R/filterGenes.R
17305596cf1f253695b6343e5f8d3b88 *R/fitSpaNormNB.R
38407c96900ef318e092fc6907e8c746 *R/gpuFunctions.R
44893b8d51a3b5172c590ea67d60200e *R/mainSpaNorm.R
3ae4a62b8b698cfb17caf678914df758 *R/mainSpaNormPCA.R
d51bbbafb61eb19686af33b407916642 *R/mainSpaNormSVG.R
1793e925b735fb00ef61ae0a68a49c43 *R/nbBlockDesign.R
5586d95d2c0a220fc39e16e347167622 *R/nbSolver.R
a4ecf5979cc0d1941dd5ff334d21cf34 *R/nbSolverBatch.R
9d067a68c06e81fe83060a7b592cb49f *R/plotCovariates.R
d4c04bba4e1e63c8d786d737fa0e73bc *R/plotSpatial.R
5d2f7da3015e61b5115987fbc4704d0b *R/polishEngine.R
6aa3d43cb516a45cd181d2a6f6f1c5a2 *R/polishEngineBatch.R
b257328c2e1d04dc9f14ff78bbf632b7 *R/polishNB.R
d8bbe51b946d4e1656ea700323a094f8 *R/polishSpaNorm.R
09334d98a29bc9506dbda3bbadedce31 *R/polishSpaNormJoint.R
78a5375c32348e6e852dc2eed5df0550 *R/polishSpaNormModel.R
4eeb6180a939237ea3667fa2273dbee5 *R/quasilik.R
28c99b02ea7b31a1d9be8e300b0d53af *R/tpsBasis.R
fa09b0ccb413512d7057b02bc893e5ed *R/zzz.R
8751d9a5ba88ca5e51d74f94b8bac145 *README.md
9b20ffb81f5da5c612963da6b1009f21 *build/vignette.rds
fbde1fc241ee3e0356593553ee252df6 *data/HumanDLPFC.rda
cf33458f18ac1f7ec73e81b2e9c9d0cb *data/datalist
910d961b03b3883fcbd54ee1a1a13051 *inst/CITATION
270e8cb1bc2bdb167c58f6d851243e97 *inst/REFERENCES.bib
5e2082c8547283e0289ad5be2b379bef *inst/doc/SpaNorm.R
3822ba1f5d01433a0bd675ab2b5a99fa *inst/doc/SpaNorm.Rmd
b99d689875687a94aa0b30d2c3198a98 *inst/doc/SpaNorm.html
ffc432e638d04818d56d0adeeec6252a *man/HumanDLPFC.Rd
13b72b59093f13c01925d4f449f19fb7 *man/SpaNorm.Rd
b37cb035adbabbaec2a158c14d9a8430 *man/SpaNormFit.Rd
0d2f89f5fba23e73c5458ce966690776 *man/SpaNormPCA.Rd
df69dcb2e16682ab05ac5e23d803fb35 *man/SpaNormSVG.Rd
83736cbd7bcc69485e0174377b9ba610 *man/add_vec_mat_gpu.Rd
2b7fe9065db0b0b8a370ca92c6c001c0 *man/calculateMu.Rd
0f4eba3920ad14aebbd42d259a28f76b *man/checkGPU.Rd
b7d647b9c09c638d13c1b351d005bc75 *man/diag_mat.Rd
d28be06d94199c68d2eb51ee0ea8b6f3 *man/dnbinom_gpu.Rd
890d754571e01f3d9e5fbd899febc928 *man/fastSizeFactors.Rd
425f96378906e0c1121a56d244dc7ec7 *man/figures/logo.png
063f32ce0b7a5b2f2a934a55473ccc61 *man/filterGenes.Rd
b4f9b66966697bb1e0abe093a0ecf139 *man/fitNB.Rd
04ea5eb376f2204321aec10ca4929dbd *man/getBackendDevice.Rd
df3928ebd089bccb0a09c9d387179a44 *man/getBackendDtype.Rd
fabc0074cf9a41d7e48fb89033b7a8e0 *man/getGPUMemoryBudget.Rd
0288c5c3bcdffe50b1dd4660a6a3ac54 *man/getSVGResults.Rd
af6ec238736a41588c9b666ac1cefd5a *man/gpuDtypeBytes.Rd
2821958cb9c95bd89917188d19a8396b *man/hasBadValues.Rd
f364bea14c0be6623e0c4a7a7425811d *man/invert_mat.Rd
23a21987c953cacaf3b65a170980f7a3 *man/invert_mat_batched.Rd
4dd01bb15b40c4b589d6378287dbcab5 *man/isPolished.Rd
769652eba8c95407c5252fb3878fef8f *man/is_torch_tensor.Rd
728c6b512086acf472598069fd8dac3b *man/matmul_gpu.Rd
2859bb029bffc42a7457acc08e087d07 *man/mult_vec_mat_gpu.Rd
a1d768a6a063b30f10c0234ee0ca85d8 *man/nbBlockDesign.Rd
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bbdbd0c012102901ca58e510a13aa920 *man/nbMuFloor.Rd
ac241e8a734961d2ae16571424e5003e *man/nbNewtonSolver.Rd
d07911a59c9e1a6f9cabecf99a9f8102 *man/nbProfilePsi.Rd
5bcbe004c5645353eea103711a411434 *man/nbUnitDeviance.Rd
60fbb3d467678661165a86ff87d225b3 *man/plotCovariate.Rd
c7ad8131edf9c56e9ece60e853a34d8c *man/plotSpatial.Rd
b9d751880d6b56e039a76de6168fff04 *man/polishNB.Rd
0ad7c44240d9475a8206be82f04e4c5a *man/polishSpaNorm.Rd
36af2c31139ab5bc0337528ca2441ffd *man/qlDispersion.Rd
2f4cedf307ed7ae4f6601566ce281979 *man/qlMomentTable.Rd
8b7949be801267033f02e40a14c33253 *man/resetGPUCache.Rd
34b74045546172aca6b77acd6bb6f6b7 *man/rowSums_gpu.Rd
665fa476e8b462024394c01c2b3c38ab *man/setGPUMemoryBudget.Rd
5339541a76f55cf40eac40c18eb717d4 *man/tcrossprod_gpu.Rd
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a6be9a495beaf7b29fb8d1a63ec6ca2d *man/toGPUVector.Rd
5004cd99b84c3fcd8cfb28357b1a669d *man/toRMatrix.Rd
23338fd5727af7138f1b4cb092a00b0b *man/topSVGs.Rd
550de4d7560b1536f8eb7e841968d119 *man/tpsBasis.Rd
6c4c748aa74f49df9531f4b2ff5f700d *tests/testthat.R
a6b9f21fd60d3c1178f06562be54883a *tests/testthat/fixtures/spanormfit_1713_noslot.rds
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61b4fc3120d7e653a57533bd74e66cd4 *tests/testthat/test-fastSizeFactors.R
7129091fbf21ef149283f585be39b6f6 *tests/testthat/test-filterGenes.R
39f3a11770c91a264c99ea75ffd3ff3b *tests/testthat/test-fitNB-offset.R
4418b3a9071fa1eebda37d95fa1ff77d *tests/testthat/test-fitNB-psi.R
4fb2d3c0ad7f7cd7dfb03e2df73b4ff5 *tests/testthat/test-fitSpaNormNB.R
1066abef9792e9c7632070d4dd972a1f *tests/testthat/test-gpuFunctions.R
9e29b4670e48365520eef576b4f3e244 *tests/testthat/test-mainSpaNorm.R
6372d530d7206d63f76e1a11f38913bc *tests/testthat/test-mainSpaNormPCA.R
338a78dc24cf929fe34e80fd50179d6e *tests/testthat/test-mainSpaNormSVG.R
6f56047841f33a8131b64dad1fd77ebf *tests/testthat/test-nbArrayBatch.R
a9f1033a6fb7847e9849cfc9e0879ce1 *tests/testthat/test-nbBlockDesign.R
adb467c169dc997506aa22bb28d26209 *tests/testthat/test-nbSolver.R
b855a675f56bfda27cf0e5e1f75fe260 *tests/testthat/test-plotSpatial-aes.R
ddb9b981a84f83a9869e57da149b147e *tests/testthat/test-polishEngine.R
3635d5c44d037fd2a06df3c4e5eb3ba3 *tests/testthat/test-polishNB.R
5039512ad9e9f7bf233ee3eb3f276fac *tests/testthat/test-polishSpaNorm.R
55d3b0e16c992673fd415d912ac3f14a *tests/testthat/test-polishSpaNormJoint.R
4a3672e759ed9c625fb45b2c6df9e07e *tests/testthat/test-polishSpaNormModel.R
d85bdb1b64a05ea92942b6e294b82465 *tests/testthat/test-quasilik.R
978c9cfd4e6a9130eb15c75ee9f7b968 *tests/testthat/test-tpsBasis.R
3822ba1f5d01433a0bd675ab2b5a99fa *vignettes/SpaNorm.Rmd
9b1995212a66b584da099b363617d426 *vignettes/SpaNormWorkflow.png
