6027c4f8a9035f0a3d14c82a32c39895 *DESCRIPTION
f4eda51018051de136d3b3742e9a7a40 *LICENSE.md
71b3502d606163f0d8bab229fec6f0b6 *NAMESPACE
0165ad00e413d663b156a400823477e2 *R/RAIDS.R
73c72c30ce71c07a238878631bbd50d2 *R/RAIDSparam_class.R
5f8c9f1f8fd90d7cbdf662880b19eca5 *R/allelicFraction.R
e40856015f07b64f0a310932f6c145ab *R/allelicFraction_internal.R
df163a7fbc1a0399bed5b54dc480c10b *R/ancestryAnalysis.R
0c858c2ffbb37e436cb173446ae922df *R/ancestryAnalysis_internal.R
8c8ac1ad23dc13a8a0b1424ab098b355 *R/gdsWrapper.R
7f2af94337f830420867e7535b8b2d13 *R/gdsWrapper2_internal.R
28f833cfaf35002c7ba13ea3dd0e9074 *R/gdsWrapper_internal.R
bb529d2e5ef944f199a690e4a9427a54 *R/process1KG.R
2d6facab54b86de158e2418bd8b93b08 *R/process1KG_internal.R
69ee48602209c18552e1275047743095 *R/processRef.R
782363dc9746922e6bceccfc06b596d2 *R/processRef_internal.R
d3c0dfb9b3345af1f032cea3a02a0bc4 *R/processStudy.R
3f4b68604c4cda4c5b6f2a2c8b57d26e *R/processStudy_internal.R
f9ef0303c462cca71d460523994abdfd *R/synthetic.R
ef7b64ad706998928e6b4af6e10a11b3 *R/synthetic2.R
dd573e83da289e908cd2317a521624d3 *R/synthetic_internal.R
1341173c851d911cfa1dd496ae7da3a1 *R/tools.R
e7dbccbcac03b16413baee9dc2cf31ab *R/tools_internal.R
ffe2f6b2881ef64604a1a2f1a8efa837 *R/visualization.R
40e20624359b525b9f4146e6384a3c30 *R/visualization_internal.R
f1b32647e68c92aa710079b351528bdf *RAIDS.Rproj
c7ab03d08be792191244f32738bbfec7 *README.md
60b123560391e7426d5fdf78defec543 *build/vignette.rds
b47db5f09fb4bae59ae9468b98f8143f *data/demoKnownSuperPop1KG.RData
beb50a26faf1d62d0d11daf9306dca81 *data/demoPCA1KG.RData
a9b2379b661f2b5ee6d8b67c128846ae *data/demoPCASyntheticProfiles.RData
bde942e66a3b153d84e2edde159d0683 *data/demoPedigreeEx1.RData
796d206fa963f4da1a5a96fccd008d5b *data/matKNNSynthetic.RData
9fd7a03138d0eac9c6f2419e77756162 *data/pedSynthetic.RData
ca5a77d9fefd5c62257429241c3339f8 *data/snpPositionDemo.RData
cd126e47c870475723396bdf522c1de4 *inst/CITATION
432cf7940856a738abe295a941ef5f9e *inst/NEWS.md
682c6a2fec0e1d8a13778a52faee6a60 *inst/doc/Create_Reference_GDS_File.R
08f69dcd6d3aadeb3819e340d8965e93 *inst/doc/Create_Reference_GDS_File.Rmd
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34e8481a0b40f9ff52e5f13722a1ae2e *inst/doc/RAIDS.R
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38238841d171d5e4512edd78c3e21ada *inst/doc/Wrappers.html
564ab1cd99f8da41775cdb52f56e668d *inst/extdata/GDS_Sample_with_study_demo.gds
34cca382ec9ee9520698873fa643621b *inst/extdata/PedigreeDemo.ped
39aacd5b66539b5a00ba388066a1378d *inst/extdata/PedigreeReferenceDemo.rds
36d3ca526c0d57e61ef6423bccee5a4a *inst/extdata/PopulationReferenceDemo.gds
d3a66642adfe5add00cda2cdaced9439 *inst/extdata/PopulationReferenceSNVAnnotationDemo.gds
67aaf583ebd92ec95cd6c2c0d2b148eb *inst/extdata/README.txt
f9a3f75d7188bce0f4419b2d49858a08 *inst/extdata/TEST_01.infoCall.RDS
a74bd1f6c3912f19614acb8dd51ba1bf *inst/extdata/block.sp.EUR.Ex.chr1.blocks.det
6d47dfa21d43bf6d31d65f03cc58d015 *inst/extdata/create_PedigreeDemoPED.R
b33ed626626b3fd7b059ecb731f5f0cd *inst/extdata/create_PedigreeReferenceDemoRDS.R
6dd08599984b0bcf64ea2832b0e24e12 *inst/extdata/create_PopulationReferenceDemoGDS.R
25fe104f6456e36455465f357722434f *inst/extdata/create_PopulationReferenceSNVAnnotationDemoGDS.R
aa3e44c7818e326d7c437788b61a4e01 *inst/extdata/create_listSNPIndexes_DemoRDS.R
5cda2bfb5f72a6e034e131d6c32518bd *inst/extdata/create_mapSNVSelected_DemoRDS.R
694fc119f7dd5cd2afbf54ca47153e76 *inst/extdata/create_unrelatedPatientsInfo_DemoRDS.R
55c83686f937839113f251e26dbaf4dd *inst/extdata/demoAncestryCall/ex1.gds
a47b2fc69db3b5819081ed8380ec1675 *inst/extdata/demoAncestryCall/ex1/KNN.synt.ex1.1.rds
11b048f06a82968d7133ff55120482e3 *inst/extdata/demoAncestryCall/ex1/KNN.synt.ex1.2.rds
45c731829da7c446daa564ccbb6ac551 *inst/extdata/demoGenoChr/demoGenoChr.tar
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928a1de7acf9c48d99c80ed8b9ebe30e *inst/extdata/demoProfileGenotypes/HG00109.csv.bz2
17821f431fd27cc71c9526dafef47154 *inst/extdata/example/snpPileup/ex1.generic.txt.gz
955ff19a1e0c9f682ca525129cf5ab82 *inst/extdata/example/snpPileup/ex1.txt.gz
14505f74ee8ba55cc3fe1d416a1fb0dd *inst/extdata/example/snpPileup/ex1.vcf.gz
17821f431fd27cc71c9526dafef47154 *inst/extdata/example/snpPileupRNA/ex1.generic.txt.gz
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5fadd5800847b62c54b74ccaaf2c6a17 *inst/extdata/listSNPIndexes_Demo.rds
295a7d8ef74a057df594e4febce7a9d6 *inst/extdata/mapSNVSelected_Demo.rds
db954c402a2142f24ca5c113e772f8ae *inst/extdata/matFreqSNV_Demo.txt.bz2
955ff19a1e0c9f682ca525129cf5ab82 *inst/extdata/tests/ex1.txt.gz
322ea1d3cd72d48e720a0dc2562cb92c *inst/extdata/tests/ex1_NoBlockGene.1KG_Annot_GDS.gds
afaea2452debe02aa9c45e0d1cfb3126 *inst/extdata/tests/ex1_demo.gds
64334ac0cccdca483f43ac6287f3c26f *inst/extdata/tests/ex1_demo_with_pruning.gds
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b7fc497cf479d811a644a97ba84bc172 *inst/extdata/unrelatedPatientsInfo_Demo.rds
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937376fdfcce42a79c19ca5e90ad74cc *man/admixtureMatrix.Rd
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2bf2e1509f928ac58fca5ae26de72543 *man/ancestryInferencePCAKNN.Rd
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9fa35fc88b35ab1c66c56a2ed24ed45b *man/appendGDSgenotype.Rd
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79c27e0489cbdb14c8732e0fd438d216 *man/computeAllelicFractionDNA.Rd
60140770269a27ea3e71cd34eacf8fa8 *man/computeAllelicFractionRNA.Rd
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7c394f2255eed362048ecb70865d0f25 *man/createAccuracyGraph.Rd
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9a9ca9f5e9b6da855e894c5b20cdf51a *man/createProfile2.Rd
3a45da87fcd19d65b476218be2fabfc9 *man/createStudy2GDS1KG.Rd
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908bb6cc30d83ce3edc570e582e7ba6e *man/demoPedigreeEx1.Rd
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451d001a85160a990ec3634e59683d8c *man/generateGDSSNPinfo.Rd
5a4005218c3232a954afa9b4ef550b4c *man/generateGDSgenotype.Rd
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db95262d1337e20de75291a4fbecfa92 *man/generatePhase1KG2GDS.Rd
989e2c7f53bdb7307e23b563eb2f6bf8 *man/generatePhaseRef.Rd
29e2fe12178e66aaf2e92d9477ebd314 *man/generateProfileGDS.Rd
0c786bd3ae7897f1d3be4471f528049d *man/generateProfileGenoCall.Rd
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4cfd9d84f8344c71f2ccf9328512b741 *man/generateProfileRawGDS2.Rd
6ea6a193c7ba538b0d4a15238a5a38f9 *man/generateVCF.Rd
133ba888a29518bd7ea533dececc8871 *man/genoSource-RAIDSparam-method.Rd
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9f66b7e0d7eff0173dc6971f33b98d64 *man/genoType-RAIDSparam-method.Rd
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0d6ecbc8cabd80e6b414d10524019e67 *man/genoType.Rd
c34570f831410616f64b4bd791e11237 *man/genome-RAIDSparam-method.Rd
4255f2b72f22df1457241289c2ae63e2 *man/genome.Rd
ef28514313eab63cb43c309eff1019da *man/getBlockIDs.Rd
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