Package: PinPath
Type: Package
Title: Visualization of Omics Data onto Pathway Diagrams
Version: 0.99.4
Date: 2026-03-12
Authors@R: c(
    person("Jarno", "Koetsier", role = c("aut","cre"), email = "jarno.koetsier@gmail.com", comment = c(ORCID = "0000-0002-7981-1345")),
    person("Lars", "Eijssen", role = "aut", comment = c(ORCID = "0000-0002-6473-2839")),
    person("Egon", "Willighagen", role = "aut", comment = c(ORCID = "0000-0001-7542-0286")),
    person("Stichting Terre - The Dutch Rett Syndrome Foundation", role="fnd"))
Imports: grDevices, graphics, stats, XML, xml2, magrittr, dplyr, tidyr,
        stringr, magick, shape, grid, gridBase, svglite, AnnotationDbi,
        igraph, ggraph, ggplot2, BiocFileCache, BiocGenerics, rlang
Suggests: testthat (>= 3.0.0), BiocStyle, knitr, rmarkdown,
        rWikiPathways, org.Hs.eg.db, metaboliteIDmapping
Depends: R (>= 4.6.0)
Encoding: UTF-8
Description: PinPath enables flexible visualization of (omics) data onto pathways diagrams, allowing users to pinpoint where the relevant changes occur.
    It supports pathway diagrams from WikiPathways and KEGG, as well as custom GPML and KGML files. Data can be displayed on both native pathway layouts and network representations.
License: MIT + file LICENSE
URL: https://github.com/SyNUM-lab/PinPath
BugReports: https://github.com/SyNUM-lab/PinPath/issues
biocViews: Pathways, Visualization, GraphAndNetwork, KEGG,
        Metabolomics, Proteomics, Transcriptomics, Network
NeedsCompilation: no
VignetteBuilder: knitr
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
git_url: https://git.bioconductor.org/packages/PinPath
git_branch: devel
git_last_commit: e203d06
git_last_commit_date: 2026-07-17
Repository: Bioconductor 3.24
Date/Publication: 2026-07-17
Packaged: 2026-07-17 23:35:30 UTC; biocbuild
Author: Jarno Koetsier [aut, cre] (ORCID:
    <https://orcid.org/0000-0002-7981-1345>),
  Lars Eijssen [aut] (ORCID: <https://orcid.org/0000-0002-6473-2839>),
  Egon Willighagen [aut] (ORCID: <https://orcid.org/0000-0001-7542-0286>),
  Stichting Terre - The Dutch Rett Syndrome Foundation [fnd]
Maintainer: Jarno Koetsier <jarno.koetsier@gmail.com>
