Package: DuckDBGRanges
Version: 0.99.5
Date: 2026-08-19
Title: DuckDB-Backed GenomicRanges Implementation
Description: 
    Provides DuckDB-backed implementations of GenomicRanges data structures
    for efficient, out-of-memory operations on large genomic interval datasets.
    The package includes DuckDBGRanges and DuckDBGRangesList classes with
    optimized range operations including restrict, flank, shift, findOverlaps,
    coverage, and distance calculations. Ideal for variant analysis,
    scATAC-seq peak analysis, and other genomic workflows requiring
    memory-efficient range operations on large datasets.
Authors@R: 
    c(
        person("Patrick", "Aboyoun", role=c("aut", "cre"), email="aboyounp@gene.com"),
        person("Genentech, Inc.", role="cph")
    )
License: MIT + file LICENSE
URL: https://github.com/Genentech/DuckDBGRanges
BugReports: https://github.com/Genentech/DuckDBGRanges/issues
Depends: R (>= 4.6.0), methods, stats, DuckDBDataFrame, GenomicRanges
Imports: bit64, BiocGenerics, S4Vectors, IRanges, Seqinfo,
        DelayedArray, DBI, dplyr, dbplyr
Suggests: knitr, rmarkdown, BiocStyle, testthat, microbenchmark, arrow,
        TxDb.Hsapiens.UCSC.hg38.knownGene
biocViews: DataImport, DataRepresentation, Infrastructure, Sequencing,
        Software
VignetteBuilder: knitr
Encoding: UTF-8
Collate: 'DuckDBGRanges-class.R' 'DuckDBGRanges-package.R'
        'DuckDBGRanges-utils.R' 'DuckDBGRangesList-class.R'
        'DuckDBGRangesList-utils.R'
Config/roxygen2/version: 8.1.0
git_url: https://git.bioconductor.org/packages/DuckDBGRanges
git_branch: devel
git_last_commit: 8b434a9
git_last_commit_date: 2026-08-19
Repository: Bioconductor 3.24
Date/Publication: 2026-08-20
NeedsCompilation: no
Packaged: 2026-08-20 21:44:13 UTC; biocbuild
Author: Patrick Aboyoun [aut, cre],
  Genentech, Inc. [cph]
Maintainer: Patrick Aboyoun <aboyounp@gene.com>
