c06e59049dfd0cf609f9194e5ac0eef3 *DESCRIPTION
c1126a3116c8aa1753b9a4f975ebbfb5 *NAMESPACE
04370271c1dcf138a153283d08f44b09 *NEWS.md
fe3b50496e39104fde5534b56191b9c1 *R/AIMS_functions.R
605bd9fa2373a0d2061b2d765ac3f214 *R/BreastSubtypeR_methods.R
69f7360f4fdba69c81d70a5ee727cef2 *R/NC_functions.R
f8a2c427afdc4983084ca5628f85d0a0 *R/SSPBC_functions.R
189dcfc9993e9da97d04fb9c942230f1 *R/Utilities.R
718d15b841d798609df34734fa9d5225 *R/data_doc.R
4bebabe30bac9408a39685b0576198dc *R/runShinyBreastSubtypeR.R
7e70dfcaab55439d05b5439d109a245b *R/zzz.R
eb22daa891f8df81867c59b2b12b0fbd *README.md
90e989ef546fc43bf0148a272bcf7d59 *build/vignette.rds
6c541625fe22667540ef7c11d9005290 *data/AIMSmodel.RData
d2600fffe228ceec2e1a47b586747543 *data/BreastSubtypeRobj.RData
7418017d12bdff4b0a15149e25d52e4a *data/Gene.ID.ann.RData
32b39cceec5075f8eab246f9ac71aecb *data/OSLO2EMIT0obj.RData
5139e1f0a00cbd76d6869f2f8fbbbc4a *data/TCGABRCAobj.RData
d7a778b352c11ceff81657faefc3c558 *data/datalist
1c2ba126cc1ea8ecc15dd6dc4656285d *data/sspbc.models.RData
b7a063e7b505d468e3b8e9af9b785f82 *data/sspbc.models.fullname.RData
ecb5581e6d3e6d05f553821f348b264a *inst/CITATION
f6817f108d0221a8bada145afa772378 *inst/RshinyTest/OSLO2EMIT0_GEX_log2.FPKM.txt
2fe6e743f8d95ecd25020869c5323f5e *inst/RshinyTest/OSLO2EMIT0_anno.txt
c099b3adc9a2350cc4b24bc523d3f6bd *inst/RshinyTest/OSLO2EMIT0_clinical.txt
9468024a31104b3c1268d3cdd57df734 *inst/RshinyTest/TCGABRCAsub_GEX_RawCounts.txt
5dd27135028dddddbabb40ae7909fd39 *inst/RshinyTest/TCGABRCAsub_anno.txt
76dc3e9b7a8848c2481685476915c7ae *inst/RshinyTest/TCGABRCAsub_clinical.txt
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006b29f9cfcda74bd941f7748d4837f4 *inst/ShinyBreastSubtypeR/server.R
69ad64f2d6f8f7dc82f90ef480bbe012 *inst/ShinyBreastSubtypeR/ui.R
5d179aa1cc8818821a1c742cc771d050 *inst/doc/BreastSubtypeR.R
2843c7f89dc7ddd1011df62f33e5e3fb *inst/doc/BreastSubtypeR.Rmd
f5b169592dceac481e5d225061b32bbd *inst/doc/BreastSubtypeR.html
523ef725760c0ef2e0e2e2e1cc8c4937 *inst/rstudio/addins.dcf
2e24597b4a4b2d56d99c9ba38dea1299 *man/AIMSmodel.Rd
221edd0e779031c9dffa7b3ca234e788 *man/BS_AIMS.Rd
1952bafc6e442188424a8603dc7446a1 *man/BS_Multi.Rd
ada014873acf37e2955365b6d3fbebeb *man/BS_PCAPAM50.Rd
fb88d0888679d448a127b4bc32478fd9 *man/BS_cIHC.Rd
a743731878dd321d61a1d2444ac143e3 *man/BS_cIHC.itr.Rd
369e67eca61dfcb171bba619479618e9 *man/BS_parker.Rd
468d81b2820d1ee5ceda2dee38667225 *man/BS_ssBC.Rd
37aabb87fe663100d6b8a25fa6afd65b *man/BS_sspbc.Rd
7a6873cd059e10afec02b23c187a6d8f *man/BreastSubtypeR.Rd
ffcfdaa950ce89a600b326290ddd7c2b *man/BreastSubtypeRobj.Rd
b339337c87cae7a15f7b0b680fb823ec *man/Gene.ID.ann.Rd
b3458b5978b27362866d04e70249e190 *man/Mapping.Rd
78b24d59df25568e1d3523236c2ef14b *man/OSLO2EMIT0obj.Rd
10fa7efede6f704ebc3dcc848acf2df9 *man/TCGABRCAobj.Rd
2d91774f6df5c3cef0ac2e4800a2e7c5 *man/Vis_Multi.Rd
e8e59be353bbb55d723f2ffa878ab418 *man/Vis_PCA.Rd
0ac8785ee2c00fc808461dedbe599036 *man/Vis_boxplot.Rd
ddfff29ae6b53f49e16feba851e3d7fa *man/Vis_heatmap.Rd
0def83c1430d41a0f152479fec79b668 *man/Vis_pie.Rd
45221690139c4b5619d29e008672a43b *man/iBreastSubtypeR.Rd
7eab68936aba8f8641c86d42288e0370 *man/sspbc.models.Rd
960507cb946a34ddf0da76b73bf226a6 *man/sspbc.models.fullname.Rd
4818475822f5e7c1aa2fb9226845e278 *tests/testthat.R
54ae0eb4c9200037eff5c8364fdb496e *tests/testthat/fixtures/aims_1.5.6_multisample.rds
402f1df70b08eede88f319a1df85d9c6 *tests/testthat/fixtures/cihc_itr_1.5.5.rds
0a7979934ae1f1eab5c389666812f9f5 *tests/testthat/fixtures/make-cihc-itr-1.5.5.R
5292205e4999afa5258b5b12a7cda322 *tests/testthat/test-aims-single-sample.R
3d8767b2c5e6cc7646d5e8e9a1007279 *tests/testthat/test-auto-cihc-itr-routing.R
b94a7f7adb07248bbdadd4cea5890a07 *tests/testthat/test-auto-fixture-regression.R
b9d5e9b0e5f6a533783e98a1c36d993d *tests/testthat/test-auto-routing.R
6eea3208050cacd2da4d24a1ace11fcf *tests/testthat/test-auto-subsetting.R
752268b834ad0aff9bab2bf107a3b314 *tests/testthat/test-bs-multi-manual.R
15443cea6abe541e112fe611243db700 *tests/testthat/test-bs-multi-messages.R
a64064f10fdc59fd39ba7229136a2403 *tests/testthat/test-cihc-itr-target.R
e4c688386134a4fb8fe092cbf91de247 *tests/testthat/test-entropy.R
6b4424bec4eb1cf6fabe90cd89c0f7b5 *tests/testthat/test-er-balancing-errors.R
867ffdf57d64183148a526b62a904a1e *tests/testthat/test-mapping-robustness.R
586d7ca5760629bf49657bb0c0ddfb1f *tests/testthat/test-pcapam50-unknown-er.R
9280e3fc9f433732a9d1d48abaaa884a *tests/testthat/test-phenodata-normalization.R
0e9cbe431799f4f7484189f0400836fa *tests/testthat/test-ror-groups.R
4c8045849e22874e852f965e11fcd7ff *tests/testthat/test-shiny-launcher.R
35f3e4c1c10af58b1c8c85e1e3e770c7 *tests/testthat/test-shiny-preflight.R
738241cc9015d01714f0a677acc8e0b0 *tests/testthat/test-shiny-state.R
1001a1c590495e66a1b700ce60f5261c *tests/testthat/test-tn-cohort-detection.R
2843c7f89dc7ddd1011df62f33e5e3fb *vignettes/BreastSubtypeR.Rmd
