Changes in version 1.17.6                        

  - Update prepareSpatialDecon() to convert the selected log2 assay to
    linear expression by default, preserving its normalization or batch
    correction. Add isLog for linear inputs and recomputeCPM to
    recompute linear CPM from raw counts with matching negative-probe
    scaling. Raw metadata probes now require recomputation or raw-count
    input rather than an independently normalized background.

                       Changes in version 1.17.4                        

  - Fix installed-package checks for the DCC importer tests and qualify
    stats::setNames() to avoid R CMD check notes.

                       Changes in version 1.17.3                        

  - Add a standR-native readGeoMxFromDcc() importer for DCC/PKC
    workflows and remove GeomxTools from Suggests.

                       Changes in version 1.17.2                        

  - Add GeomxTools to Suggests so examples using
    readGeoMxFromNanoStringGeoMxSet() can run in coverage workflows.

                       Changes in version 1.17.1                        

  - Add readGeoMxFromNanoStringGeoMxSet() to convert
    GeomxTools::readNanoStringGeoMxSet() / NanoStringGeoMxSet objects
    from DCC/PKC workflows into SpatialExperiment objects for standR.

  - Improve prepareSpatialDecon() so negative probes removed by
    readGeoMx(rmNegProbe = TRUE) can be read from
    metadata(spe)$NegProbes.

                        Changes in version 1.3.9                        

  - Add function prepareSpatialDecon to help using R package
    SpatialDecon after using standR to preprocess GeoMx data.

  - New RUV-4: now using the RUV-4 from standR allow you to perform
    rank-based analysis such as gene-set scoring with the
    RUV-4-normalised count.

  - New vignette - A quick start guide to the standR package.

  - Many bugs fixed.

                       Changes in version 0.99.0                        

  - First release of the package.