Changes in version 1.39.2                        

  - gseMeSH() now exposes an eps argument and forwards it to
    enrichit::gsea_gson(), matching the other GSEA wrappers in the
    family (2026-09-22, Tue)
  - expose an explicit seed argument on gseMeSH() and forward it to
    enrichit::gsea_gson() (2026-08-15, Fri)
      - set it to a number (or TRUE for a fixed default seed) to get
        identical GSEA results across runs, FALSE (default) draws a
        fresh seed on each run; set.seed() before the call still works
      - pvalueCutoff is applied to both pvalue and p.adjust inside
        enrichit::gsea_gson() (requires enrichit >= 0.2.2), matching the
        historical clusterProfiler/DOSE double-filtering behavior

                       Changes in version 1.39.1                        

  - use Quarto for the package vignette and keep examples in the online
    book (2026-06-30, Tue)
  - update package description to better summarize supported data and
    analyses (2026-06-30, Tue)
  - improve performance of gene-to-MeSH lookup and MeSH
    ancestor/offspring traversal (2026-06-30, Tue)
  - validate MeSHDb resources before querying to report clearer errors
    for incompatible AnnotationHub results (2026-06-30, Tue)

                       Changes in version 1.38.0                        

  - Bioconductor RELEASE_3_23 (2026-04-29, Wed)

                       Changes in version 1.37.1                        

  - use 'enrichit' as engine for enrichment analysis (2025-12-07, Sun)

                       Changes in version 1.36.0                        

  - Bioconductor RELEASE_3_22 (2025-11-01, Sat)

                       Changes in version 1.34.0                        

  - Bioconductor RELEASE_3_21 (2025-04-17, Thu)

                       Changes in version 1.32.0                        

  - Bioconductor RELEASE_3_20 (2024-10-30, Wed)

                       Changes in version 1.31.1                        

  - use yulab.utils::yulab_msg() for startup message (2024-07-26, Fri)

                       Changes in version 1.30.0                        

  - Bioconductor RELEASE_3_19 (2024-05-15, Wed)

                       Changes in version 1.28.0                        

  - Bioconductor RELEASE_3_18 (2023-10-25, Wed)

                       Changes in version 1.24.0                        

  - Bioconductor RELEASE_3_16 (2022-11-02, Wed)

                       Changes in version 1.19.3                        

  - cache mesh db and table (2021-09-01, Wed)

                       Changes in version 1.19.2                        

  - import yulab.utils (2021-8-19, Thu)

                       Changes in version 1.19.1                        

  - remove MeSH.db package and use AnnotationHub to get MeSHDb databases
    (2021-8-13, Fri)

                       Changes in version 1.18.0                        

  - Bioconductor 3.13 release

                       Changes in version 1.16.0                        

  - Bioconductor 3.12 release (2020-10-28, Wed)

                       Changes in version 1.14.0                        

  - Bioconductor 3.11 release

                       Changes in version 1.12.0                        

  - Bioconductor 3.10 release