uncoverappLib
This is the development version of uncoverappLib; for the stable release version, see uncoverappLib.
Interactive graphical application for clinical assessment of sequence coverage at the base-pair level
Bioconductor version: Development (3.24)
a Shiny application containing a suite of graphical and statistical tools to support clinical assessment of low coverage regions.It displays three web pages each providing a different analysis module: Coverage analysis, calculate AF by allele frequency app and binomial distribution. uncoverAPP provides a statisticl summary of coverage given target file or genes name.
Author: Emanuela Iovino [cre, aut], Tommaso Pippucci [aut]
Maintainer: Emanuela Iovino <emanuela.iovino at unibo.it>
citation("uncoverappLib")):Emanuela Iovino, Tommaso Pippucci. uncoverappLib: Interactive graphical application for clinical assessment of sequence coverage at the base-pair level. doi:10.18129/B9.bioc.uncoverappLib, R package version 1.23.0, https://bioconductor.org/packages/uncoverappLib.
Generated from the package metadata; it may differ from the package's own citation.
Installation
To install this package, start R (version "4.6") and enter:
if (!require("BiocManager", quietly = TRUE))
install.packages("BiocManager")
## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")
BiocManager::install("uncoverappLib")For older versions of R, please refer to the appropriate Bioconductor release.
Documentation
To view documentation for the version of this package installed in your system, start R and enter:
browseVignettes("uncoverappLib")| uncoverappLib | HTML | R Script |
| Reference Manual | ||
| NEWS | Text | |
| LICENSE | Text |
Details
| biocViews | Annotation, Coverage, Software, Visualization |
| Version | 1.23.0 |
| In Bioconductor since | BioC 3.12 (R-4.0) (6 years) |
| License | MIT + file LICENSE |
| Depends | |
| Imports | markdown, shiny, shinyjs, shinyBS, shinyWidgets, shinycssloaders, DT, Gviz, Homo.sapiens, openxlsx, condformat, stringr, org.Hs.eg.db, TxDb.Hsapiens.UCSC.hg38.knownGene, BiocFileCache, rappdirs, TxDb.Hsapiens.UCSC.hg19.knownGene, rlist, utils, S4Vectors, EnsDb.Hsapiens.v75, EnsDb.Hsapiens.v86, OrganismDbi, processx, Rsamtools, GenomicRanges |
| System Requirements | |
| URL | https://github.com/Manuelaio/uncoverappLib |
| Bug Reports | https://github.com/Manuelaio/uncoverappLib/issues |
See More
| Suggests | BiocStyle, knitr, testthat, rmarkdown, dplyr |
| Linking To | |
| Enhances | |
| Depends On Me | |
| Imports Me | |
| Suggests Me | |
| Links To Me | |
| Build Report | Build Report, r-universe |
Package Archives
Follow Installation instructions to use this package in your R session.
| Source Package | uncoverappLib_1.23.0.tar.gz |
| Windows Binary (x86_64) | uncoverappLib_1.23.0.zip (64-bit only) |
| macOS Binary (big-sur-x86_64) | uncoverappLib_1.23.0.tgz |
| macOS Binary (sonoma-arm64) | uncoverappLib_1.23.0.tgz |
| Source Repository | git clone https://git.bioconductor.org/packages/uncoverappLib |
| Source Repository (Developer Access) | git clone git@git.bioconductor.org:packages/uncoverappLib |
| Package Short Url | https://bioconductor.org/packages/uncoverappLib/ |
| Package Downloads Report | Download Stats |