• Home
• Bioconductor 3.24
• Software Packages
• scCertify (development version)

scCertify

This is the development version of scCertify; to use it, please install the devel version of Bioconductor.

Explainable Confidence Scoring for Single-Cell Annotations

DOI: 10.18129/B9.bioc.scCertify

Bioconductor version: Development (3.24)

scCertify provides an explainable framework for assessing the confidence of cell-type annotations in single-cell RNA sequencing data. Confidence scores are computed using marker enrichment, neighborhood agreement, entropy-based uncertainty estimation, and ontology-aware label matching to support transparent interpretation of annotation quality.

Author: Jaya Surya Doddetipalli [aut, cre] ORCID: 0009-0002-8975-4425

Maintainer: Jaya Surya Doddetipalli <jayasuryadoddetipalli at gmail.com>

Citation (from within R, enter citation("scCertify")):

Jaya Surya Doddetipalli. scCertify: Explainable Confidence Scoring for Single-Cell Annotations. doi:10.18129/B9.bioc.scCertify, R package version 0.99.7, https://bioconductor.org/packages/scCertify.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("scCertify")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("scCertify")

Details

Package Archives

Follow Installation instructions to use this package in your R session.