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punKEGGer

This is the development version of punKEGGer; to use it, please install the devel version of Bioconductor.

Parse, Expand, Annotate and Visualize KEGG Pathway Networks as Tidy Graphs

DOI: 10.18129/B9.bioc.punKEGGer

Bioconductor version: Development (3.24)

Provides tools to parse KEGG pathway KGML files into tidy graphs, expand metanodes (e.g., multi-gene entries), annotate them with custom dictionaries, and produce consistent visualizations using ggraph. Enables integration of KEGG pathways with tidygraph-based workflows.

Author: Guillermo de Anda Jáuregui [aut, cre]

Maintainer: Guillermo de Anda Jáuregui <gdeanda at inmegen.edu.mx>

Citation (from within R, enter citation("punKEGGer")):

Guillermo de Anda Jáuregui. punKEGGer: Parse, Expand, Annotate and Visualize KEGG Pathway Networks as Tidy Graphs. doi:10.18129/B9.bioc.punKEGGer, R package version 0.99.65, https://bioconductor.org/packages/punKEGGer.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("punKEGGer")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("punKEGGer")

Details

Package Archives

Follow Installation instructions to use this package in your R session.