matter

This is the development version of matter; for the stable release version, see matter.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4

Out-of-core statistical computing and signal processing

Bioconductor version: Development (3.24)

Toolbox for larger-than-memory scientific computing and visualization, providing efficient out-of-core data structures using files or shared memory, for dense and sparse vectors, matrices, and arrays, with applications to nonuniformly sampled signals and images.

Author: Kylie A. Bemis <k.bemis at northeastern.edu>

Maintainer: Kylie A. Bemis <k.bemis at northeastern.edu>

Citation (from within R, enter citation("matter")):

Kylie A. Bemis. matter: Out-of-core statistical computing and signal processing. doi:10.18129/B9.bioc.matter, R package version 2.15.0, https://bioconductor.org/packages/matter.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("matter")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("matter")

1. Matter 2: User guide for flexible out-of-memory data structures	HTML	R Script
2. Matter 2: Signal and image processing	HTML	R Script
Reference Manual	PDF
NEWS	Text
LICENSE	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	DataImport, DataRepresentation, DimensionReduction, Infrastructure, Preprocessing, Software
Version	2.15.0
In Bioconductor since	BioC 3.4 (R-3.3) (10 years)
License	Artistic-2.0 \| file LICENSE
Depends	R (>= 4.4), BiocParallel, Matrix, methods
Imports	BiocGenerics, ProtGenerics, digest, irlba, stats, stats4, graphics, grDevices, parallel, utils
System Requirements
URL	https://github.com/kuwisdelu/matter
Bug Reports	https://github.com/kuwisdelu/matter/issues

Suggests	BiocStyle, knitr, testthat, plotly
Linking To	BH
Enhances
Depends On Me	CardinalIO
Imports Me	Cardinal
Suggests Me	quantMSImageR
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	matter_2.15.0.tar.gz
Windows Binary (x86_64)	matter_2.15.0.zip
macOS Binary (big-sur-x86_64)	matter_2.15.0.tgz
macOS Binary (sonoma-arm64)	matter_2.15.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/matter
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/matter
Package Short Url	https://bioconductor.org/packages/matter/
Package Downloads Report	Download Stats