flowStats

This is the development version of flowStats; for the stable release version, see flowStats.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13, 2.12, 2.11, 2.10, 2.9, 2.8, 2.7, 2.6, 2.5

Statistical methods for the analysis of flow cytometry data

Bioconductor version: Development (3.24)

Methods and functionality to analyse flow data that is beyond the basic infrastructure provided by the flowCore package.

Author: Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee

Maintainer: Greg Finak <greg at ozette.com>, Mike Jiang <mike at ozette.com>

Citation (from within R, enter citation("flowStats")):

Florian Hahne, Nishant Gopalakrishnan, Alireza Hadj Khodabakhshi, Chao-Jen Wong, Kyongryun Lee. flowStats: Statistical methods for the analysis of flow cytometry data. doi:10.18129/B9.bioc.flowStats, R package version 4.25.0, https://bioconductor.org/packages/flowStats.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("flowStats")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("flowStats")

flowStats Overview	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	CellBasedAssays, FlowCytometry, ImmunoOncology, Software
Version	4.25.0
In Bioconductor since	BioC 2.4 (R-2.9) (17.5 years)
License	Artistic-2.0
Depends	R (>= 3.0.2)
Imports	BiocGenerics, MASS, flowCore (>= 1.99.6), flowWorkspace, ncdfFlow (>= 2.19.5), flowViz, fda (>= 2.2.6), Biobase, methods, grDevices, graphics, stats, cluster, utils, KernSmooth, lattice, ks, RColorBrewer, rrcov, corpcor, mnormt, clue
System Requirements
URL	http://www.github.com/RGLab/flowStats
Bug Reports	http://www.github.com/RGLab/flowStats/issues

Suggests	xtable, testthat, openCyto, ggcyto, ggridges
Linking To
Enhances	RBGL, graph
Depends On Me	flowVS, highthroughputassays
Imports Me
Suggests Me	cydar, flowClust, flowCore, flowTime, flowViz, ggcyto, idendr0, ncdfFlow, openCyto
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	flowStats_4.25.0.tar.gz
Windows Binary (x86_64)	flowStats_4.25.0.zip
macOS Binary (big-sur-x86_64)	flowStats_4.25.0.tgz
macOS Binary (sonoma-arm64)	flowStats_4.25.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/flowStats
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/flowStats
Package Short Url	https://bioconductor.org/packages/flowStats/
Package Downloads Report	Download Stats