diffcoexp

This is the development version of diffcoexp; for the stable release version, see diffcoexp.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7

Differential Co-expression Analysis

Bioconductor version: Development (3.24)

A tool for the identification of differentially coexpressed links (DCLs) and differentially coexpressed genes (DCGs). DCLs are gene pairs with significantly different correlation coefficients under two conditions. DCGs are genes with significantly more DCLs than by chance.

Author: Wenbin Wei, Sandeep Amberkar, Winston Hide

Maintainer: Wenbin Wei <wenbin.wei2 at durham.ac.uk>

Citation (from within R, enter citation("diffcoexp")):

Wenbin Wei, Sandeep Amberkar, Winston Hide. diffcoexp: Differential Co-expression Analysis. doi:10.18129/B9.bioc.diffcoexp, R package version 1.33.0, https://bioconductor.org/packages/diffcoexp.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("diffcoexp")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("diffcoexp")

About diffcoexp	PDF	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Coverage, DifferentialExpression, GeneExpression, ImmunoOncology, Microarray, OneChannel, RNASeq, Sequencing, Software, Transcription, TwoChannel
Version	1.33.0
In Bioconductor since	BioC 3.7 (R-3.5) (8.5 years)
License	GPL (>2)
Depends	R (>= 3.5), WGCNA, SummarizedExperiment
Imports	stats, DiffCorr, psych, igraph, BiocGenerics
System Requirements
URL	https://github.com/hidelab/diffcoexp

Suggests	GEOquery, RUnit
Linking To
Enhances
Depends On Me
Imports Me	ExpHunterSuite
Suggests Me
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	diffcoexp_1.33.0.tar.gz
Windows Binary (x86_64)	diffcoexp_1.33.0.zip (64-bit only)
macOS Binary (big-sur-x86_64)	diffcoexp_1.33.0.tgz
macOS Binary (sonoma-arm64)	diffcoexp_1.33.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/diffcoexp
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/diffcoexp
Package Short Url	https://bioconductor.org/packages/diffcoexp/
Package Downloads Report	Download Stats