cleaver

This is the development version of cleaver; for the stable release version, see cleaver.

All versions

3.24 (devel), 3.23 (release), 3.22, 3.21, 3.20, 3.19, 3.18, 3.17, 3.16, 3.15, 3.14, 3.13, 3.12, 3.11, 3.10, 3.9, 3.8, 3.7, 3.6, 3.5, 3.4, 3.3, 3.2, 3.1, 3.0, 2.14, 2.13

Cleavage of Polypeptide Sequences

Bioconductor version: Development (3.24)

In-silico cleavage of polypeptide sequences. The cleavage rules are taken from: http://web.expasy.org/peptide_cutter/peptidecutter_enzymes.html

Author: Sebastian Gibb [aut, cre] ORCID: 0000-0001-7406-4443

Maintainer: Sebastian Gibb <mail at sebastiangibb.de>

Citation (from within R, enter citation("cleaver")):

Sebastian Gibb. cleaver: Cleavage of Polypeptide Sequences. doi:10.18129/B9.bioc.cleaver, R package version 1.51.0, https://bioconductor.org/packages/cleaver.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("cleaver")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("cleaver")

In-silico cleavage of polypeptides	HTML	R Script
Reference Manual	PDF
NEWS	Text

Need some help? Ask on the Bioconductor Support site!

Details

biocViews	Proteomics, Software
Version	1.51.0
In Bioconductor since	BioC 2.13 (R-3.0) (13 years)
License	GPL (>= 3)
Depends	R (>= 3.0.0), methods, Biostrings (>= 1.29.8)
Imports	S4Vectors, IRanges
System Requirements
URL	https://codeberg.org/sgibb/cleaver/
Bug Reports	https://codeberg.org/sgibb/cleaver/issues/

Suggests	testthat (>= 0.8), knitr, BiocStyle (>= 0.0.14), rmarkdown, BRAIN, UniProt.ws (>= 2.36.5)
Linking To
Enhances
Depends On Me
Imports Me	pepVet, ProteoDisco
Suggests Me	RforProteomics
Links To Me
Build Report	Build Report, r-universe

Package Archives

Follow Installation instructions to use this package in your R session.

Source Package	cleaver_1.51.0.tar.gz
Windows Binary (x86_64)	cleaver_1.51.0.zip
macOS Binary (big-sur-x86_64)	cleaver_1.51.0.tgz
macOS Binary (sonoma-arm64)	cleaver_1.51.0.tgz
Source Repository	git clone https://git.bioconductor.org/packages/cleaver
Source Repository (Developer Access)	git clone git@git.bioconductor.org:packages/cleaver
Package Short Url	https://bioconductor.org/packages/cleaver/
Package Downloads Report	Download Stats