• Home
• Bioconductor 3.24
• Software Packages
• Bioc.gff (development version)

Bioc.gff

This is the development version of Bioc.gff; for the stable release version, see Bioc.gff.

All versions

3.24 (devel), 3.23 (release), 3.22

Read and write GFF and GTF files

DOI: 10.18129/B9.bioc.Bioc.gff

Bioconductor version: Development (3.24)

Parse GFF and GTF files using C++ classes. The package also provides utilities to read and write GFF3 files. The GFF (General Feature Format) format is a tab-delimited file format for describing genes and other features of DNA, RNA, and protein sequences. GFF files are often used to describe the features of genomes.

Author: Michael Lawrence [aut], Hervé Pagès [aut], Marcel Ramos [ctb], Bioconductor Package Maintainer [cre]

Maintainer: Bioconductor Package Maintainer <maintainer at bioconductor.org>

Citation (from within R, enter citation("Bioc.gff")):

Michael Lawrence, Hervé Pagès. Bioc.gff: Read and write GFF and GTF files. doi:10.18129/B9.bioc.Bioc.gff, R package version 1.3.0, https://bioconductor.org/packages/Bioc.gff.

Generated from the package metadata; it may differ from the package's own citation.

Installation

To install this package, start R (version "4.6") and enter:

if (!require("BiocManager", quietly = TRUE))
    install.packages("BiocManager")

## The following initializes the development version of Bioconductor
BiocManager::install(version = "devel")

BiocManager::install("Bioc.gff")

For older versions of R, please refer to the appropriate Bioconductor release.

Documentation

To view documentation for the version of this package installed in your system, start R and enter:

browseVignettes("Bioc.gff")

Details

Package Archives

Follow Installation instructions to use this package in your R session.