tTEscanR-package	tTEscanR-package
computeAAUsage	ComputeAAUsage
computeAnticodonUsage	ComputeAnticodonUsage
computeCodonUsage	ComputeCodonUsage
computeCorrelationBackground	ComputeCorrelationBackground
computeDEResults	ComputeDEResults
computeExonicBackground	ComputeExonicBackground
computeMeanUsage	ComputeMeanUsage
computeTheoreticalTE	computeTheoreticalTE
controlVerbose	controlVerbose
createObject	CreateObject
default_tTEscanR_metadata	default_tTEscanR_metadata
default_tTEscanR_mRNA_data	default_tTEscanR_mRNA_data
default_tTEscanR_tRNA_data	default_tTEscanR_tRNA_data
extractCodons	ExtractCodons
featuresToAA	FeaturesToAA
getCodonFreq	GetCodonFreq
getPermutationDist	GetPermutationDist
groupConditions	GroupConditions
mergeMatrices	MergeMatrices
obtainSignificance	ObtainSignificance
plotCorrelation	PlotCorrelation
plotDEResults	PlotDEResults
plotDistribution	PlotDistribution
plotPermutation	PlotPermutation
plotProportion	PlotProportion
plotTargetComparison	PlotTargetComparison
plotTEscore	PlotTEscore
runDEAnalysis	RunDEAnalysis
runPipeline	RunPipeline
showPoolContribution	ShowPoolContribution
transformFormat	TransformFormat
tRNAFilterCuts	tRNAFilterCuts
tRNAGetMatrix	tRNAGetMatrix
tRNASetCutoff	tRNASetCutoff
tRNASetGenes	tRNASetGenes
tTEscanR	tTEscanR-package
updateObject	UpdateObject
