Tools for Calculating for rDNA in Sequencing Data
![[R logo]](../../../doc/html/Rlogo.svg)
![[Up]](../../../doc/html/left.jpg)
![[Top]](../../../doc/html/up.jpg)
Documentation for package ‘seqRdna’ version 0.99.5
Help Pages
| absolute_rDNA_CN | Calculate Absolute rDNA Copy Number |
| aggregate_numCs_numTs_region | Aggregate methylated and unmethylated counts within a genomic region |
| analyze_methylation_regions | Analyze Methylation Across Genomic Regions |
| calculate_aggregate_meth | Computes the aggregate methylation for a specified genomic region across samples, grouped by their respective conditions. |
| coverage_chr | Plot Average Coverage per Chromosome |
| diff_meth | Differential Methylation Analysis of Ribosomal DNA |
| diff_meth_region | Perform Differential Methylation Analysis for a Genomic Region |
| diff_meth_site | Perform Differential Methylation Analysis at Individual Sites |
| distribution_log_odd | Calculate Log-Odds of Methylation for a Chromosome |
| extract_site_data | Extract Methylation Site Data for a Genomic Region |
| get_rDNA_data | Extract rDNA Chromosome Data |
| get_unique_chr_names | Get Unique Chromosome Names and Check Consistency |
| relative_rDNA_CN | Calculate Relative rDNA Copy Number |
| shifting | Shift rDNA Methylation Data |
| sort_by_rDNA_region | Sort Methylation Data by rDNA Regions |