absolute_rDNA_CN        Calculate Absolute rDNA Copy Number
aggregate_numCs_numTs_region
                        Aggregate methylated and unmethylated counts
                        within a genomic region
analyze_methylation_regions
                        Analyze Methylation Across Genomic Regions
calculate_aggregate_meth
                        Computes the aggregate methylation for a
                        specified genomic region across samples,
                        grouped by their respective conditions.
coverage_chr            Plot Average Coverage per Chromosome
diff_meth               Differential Methylation Analysis of Ribosomal
                        DNA
diff_meth_region        Perform Differential Methylation Analysis for a
                        Genomic Region
diff_meth_site          Perform Differential Methylation Analysis at
                        Individual Sites
distribution_log_odd    Calculate Log-Odds of Methylation for a
                        Chromosome
extract_site_data       Extract Methylation Site Data for a Genomic
                        Region
get_rDNA_data           Extract rDNA Chromosome Data
get_unique_chr_names    Get Unique Chromosome Names and Check
                        Consistency
relative_rDNA_CN        Calculate Relative rDNA Copy Number
shifting                Shift rDNA Methylation Data
sort_by_rDNA_region     Sort Methylation Data by rDNA Regions
