Data masks for SummarizedExperiment enabling dplyr-like manipulation

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Documentation for package ‘plyxp’ version 1.7.7

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

A C D F G L M N P R S U V misc

-- A --

arrange	arrange rows or columns of PlySummarizedExperiment
arrange.PlySummarizedExperiment	arrange rows or columns of PlySummarizedExperiment
as.data.frame	create data.frame
as.data.frame.PlySummarizedExperiment	create data.frame
assay-method	PlySummarizedExperiment Methods
assay<--method	PlySummarizedExperiment Methods
assays-method	PlySummarizedExperiment Methods
assays<--method	PlySummarizedExperiment Methods
assay_ctx	plyxp contexts

-- C --

class_DF	S7 classes for vctrs and S4 Vectors
class_s4_vctrs	S7 classes for vctrs and S4 Vectors
class_vctrs	S7 classes for vctrs and S4 Vectors
colData-method	PlySummarizedExperiment Methods
colData<--method	PlySummarizedExperiment Methods
colnames-method	PlySummarizedExperiment Methods
cols	plyxp contexts
col_ctx	plyxp contexts

-- D --

dimnames-method	PlySummarizedExperiment Methods
dimnames<--method	PlySummarizedExperiment Methods
dot-pronouns	contextual plyxp pronouns

-- F --

filter	filter PlySummarizedExperiment
filter.PlySummarizedExperiment	filter PlySummarizedExperiment

-- G --

group_by	apply groups to PlySummarizedExperiment
group_by.PlySummarizedExperiment	apply groups to PlySummarizedExperiment
group_data	get grouping data
group_data.PlySummarizedExperiment	get grouping data
group_split	Split a PlySummarizedExperiment based on groups
group_split.PlySummarizedExperiment	Split a PlySummarizedExperiment based on groups
group_vars	get PlySummarizedExperiment grouping Variables
group_vars.PlySummarizedExperiment	get PlySummarizedExperiment grouping Variables

-- L --

list_unchop

unchop a list of objects

-- M --

metadata-method	PlySummarizedExperiment Methods
metadata<--method	PlySummarizedExperiment Methods
mutate	Mutate a PlySummarizedExperiment object
mutate.PlySummarizedExperiment	Mutate a PlySummarizedExperiment object

-- N --

names-method	PlySummarizedExperiment Methods
ncol-method	PlySummarizedExperiment Methods
new_plyxp	SummarizedExperiment Shell Object
nrow-method	PlySummarizedExperiment Methods

-- P --

PlySummarizedExperiment	SummarizedExperiment Shell Object
PlySummarizedExperiment-class	SummarizedExperiment Shell Object
PlySummarizedExperiment-methods	PlySummarizedExperiment Methods
plyxp	Modify SummarizedExperiment Object
plyxp-context	plyxp contexts
plyxp-printing	Printing within tibble with S4 objects
plyxp_on	Modify SummarizedExperiment Object
plyxp_pillar_format	Printing within tibble with S4 objects
pull	extract data from object
pull.PlySummarizedExperiment	extract data from object

-- R --

rowData-method	PlySummarizedExperiment Methods
rowData<--method	PlySummarizedExperiment Methods
rownames-method	PlySummarizedExperiment Methods
rows	plyxp contexts
row_ctx	plyxp contexts

-- S --

se	PlySummarizedExperiment Methods
se-method	PlySummarizedExperiment Methods
se<-	PlySummarizedExperiment Methods
se<--method	PlySummarizedExperiment Methods
select	select assays, rowData, and colData names
select.PlySummarizedExperiment	select assays, rowData, and colData names
se_simple	Plyxp Simple Example Summarized Experiment
show_tidy	Printing within tibble with S4 objects
slice	Slice a PlySummarizedExperiment
slice.PlySummarizedExperiment	Slice a PlySummarizedExperiment
slice_extras	Extra slice functions for a PlySummarizedExperiment
slice_head	Extra slice functions for a PlySummarizedExperiment
slice_head.PlySummarizedExperiment	Extra slice functions for a PlySummarizedExperiment
slice_max	Extra slice functions for a PlySummarizedExperiment
slice_max.PlySummarizedExperiment	Extra slice functions for a PlySummarizedExperiment
slice_min	Extra slice functions for a PlySummarizedExperiment
slice_min.PlySummarizedExperiment	Extra slice functions for a PlySummarizedExperiment
slice_sample	Extra slice functions for a PlySummarizedExperiment
slice_sample.PlySummarizedExperiment	Extra slice functions for a PlySummarizedExperiment
slice_tail	Extra slice functions for a PlySummarizedExperiment
slice_tail.PlySummarizedExperiment	Extra slice functions for a PlySummarizedExperiment
summarise	Summarize PlySummarizedExperiment
summarise.PlySummarizedExperiment	Summarize PlySummarizedExperiment
summarize	Summarize PlySummarizedExperiment
summarize.PlySummarizedExperiment	Summarize PlySummarizedExperiment

-- U --

ungroup	get grouping data
ungroup.PlySummarizedExperiment	apply groups to PlySummarizedExperiment
use_show_default	Printing within tibble with S4 objects
use_show_tidy	Printing within tibble with S4 objects

-- V --

vctrs-vec_chop	chop a vector
vctrs-vec_recycle	Recycle a vector
vctrs-vec_rep	replicate a vector
vctrs-vec_size	extract the size of a vector
vctrs_slice	Get observations of a vector
vectors	S7 classes for vctrs and S4 Vectors
vec_chop	chop a vector
vec_group_id	Create Group Indices
vec_group_loc	Create Group Indices
vec_phantom	Printing within tibble with S4 objects
vec_ptype2	Create a common prototype of two vectors
vec_ptype_common	find the common ptype
vec_recycle	Recycle a vector
vec_rep	replicate a vector
vec_rep_each	replicate a vector
vec_size	extract the size of a vector
vec_slice	Get observations of a vector

-- misc --

.assays	contextual plyxp pronouns
.assays_asis	contextual plyxp pronouns
.cols	contextual plyxp pronouns
.cols_asis	contextual plyxp pronouns
.rows	contextual plyxp pronouns
.rows_asis	contextual plyxp pronouns