Package: lcmsPlot
Type: Package
Title: Comprehensive Liquid Chromatography-Mass Spectrometry (LC-MS)
        data visualisation package
Version: 1.1.7
Authors@R: c(
    person(
        "Ossama",
        "Edbali",
        role=c("aut","cre"),
        email="o.edbali@bham.ac.uk",
        comment = c(ORCID = "0000-0003-0132-8668")),
    person(
        c("Ralf","Johannes", "Maria"),
        "Weber",
        role=c("aut"),
        email="r.j.weber@bham.ac.uk",
        comment = c(ORCID = "0000-0002-8796-4771")))
Description: lcmsPlot is an R package designed for visualising Liquid
        Chromatography-Mass Spectrometry (LC-MS) data with
        publication-ready high-quality plots. The package enables users
        to generate and customise chromatograms, mass traces, spectra,
        and more with fine-tuned aesthetics and annotation options.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.4.0)
Imports: methods, rlang, dplyr, tibble, tidyr, BiocParallel, MSnbase,
        xcms, MsExperiment, mzR, Spectra, MsBackendMsp, S4Vectors,
        ggplot2, scales, patchwork, DBI, RSQLite, jsonlite
Suggests: knitr, rmarkdown, BiocStyle, openxlsx, faahKO, rawrr,
        msPurity, ggnewscale, htmltools, shiny, shinytoastr,
        shinytest2, testthat (>= 3.0.0)
Collate: 'lcmsPlot-package.R' 'zzz.R' 'helpers-data.R' 'helpers-s4.R'
        'raw-file-reader.R' 'xcms-raw-list.R' 'options.R'
        'processing-xcms.R' 'data-source.R'
        'data-source-compound-discoverer.R' 'data-source-mzmine.R'
        'data-source-ms-dial.R'
        'data-source-compound-discoverer-node.R'
        'data-source-lipid-search.R' 'creators-purity.R'
        'constructors-chromatograms.R' 'constructors-spectra.R'
        'data-validation.R' 'data-adapters.R' 'plot-units.R'
        'plot-chromatogram.R' 'plot-mass-trace.R' 'plot-spectrum.R'
        'plot-total-ion-current.R' 'plot-intensity-map.R'
        'plot-peak-density.R' 'plot-rt-diff.R' 'plot-purity.R'
        'plot-variants.R' 'plot.R' 'lcmsPlotDataContainer-class.R'
        'creators-chromatograms.R' 'creators-intensity-map.R'
        'creators-peak-density.R' 'creators-rt-diff.R'
        'creators-spectra.R' 'creators-total-ion-current.R'
        'lcmsPlot-class.R' 'app-utils.R' 'app-options.R'
        'app-module-chromatogram.R' 'app-module-peak-density.R'
        'app-module-spectra.R' 'app-module-tic.R' 'app-interface.R'
        'app-launcher.R'
VignetteBuilder: knitr
URL: https://github.com/computational-metabolomics/lcmsPlot
Roxygen: list(markdown = TRUE)
biocViews: Metabolomics, MassSpectrometry
BugReports: https://github.com/computational-metabolomics/lcmsPlot/issues
Config/testthat/edition: 3
Config/roxygen2/version: 8.0.0
Config/pak/sysreqs: cmake libglpk-dev make libicu-dev libuv1-dev
        libxml2-dev libnetcdf-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-07-26 14:08:28 UTC
RemoteUrl: https://github.com/bioc/lcmsPlot
RemoteRef: HEAD
RemoteSha: d9ab9daef0fc40e0ef62e91452ce6f00c751e0eb
NeedsCompilation: no
Packaged: 2026-07-26 21:42:24 UTC; root
Author: Ossama Edbali [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-0132-8668>),
  Ralf Johannes Maria Weber [aut] (ORCID:
    <https://orcid.org/0000-0002-8796-4771>)
Maintainer: Ossama Edbali <o.edbali@bham.ac.uk>
Built: R 4.6.1; ; 2026-07-26 21:45:56 UTC; windows
