760eadd0e6e2f12b823a131c8aa7ac2f *CITATION
c3ae0c3088f38e1516e9cb9b40806d71 *DESCRIPTION
e158a26a6f3676f282298f59b8aa1c16 *INDEX
f944fe9c7274906aa5243d1ef7916626 *Meta/Rd.rds
a3e67fd9c16cad93e1f3ab2cde262116 *Meta/features.rds
deb18ecd96f9d452fb9dd8961619304d *Meta/hsearch.rds
e55852c6adaacc3e40a69eb63222af4c *Meta/links.rds
83a5e2248e8c6548d543219e543e564b *Meta/nsInfo.rds
e3691de9b5da8f1327ebbb3ecaba8c40 *Meta/package.rds
b24286972e8b340027e37824f39c6a82 *Meta/vignette.rds
43e7ba3ccbf67642a22429bcbdd50f25 *NAMESPACE
210a6d33387589cb741e0ea463754cae *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/epialleleR
d4f48eda3d4533c74005a188f6688cf9 *R/epialleleR.rdb
5668e8e9c53a40de6cecc9f748fcbbf3 *R/epialleleR.rdx
2fb5ae236c9555e341699e9f4d4ce109 *README.md
ca851f33f8eabaac5dd2d1820d3b5253 *doc/epialleleR.R
9003ef5a29e2b9964deb11dc9ca0aee6 *doc/epialleleR.Rmd
af83ad9de727292097944925d22f0daf *doc/epialleleR.html
1e160b038b91832ecedec3672bfc256b *doc/index.html
7eed7238643e7f72b905223c93a98063 *doc/values.R
7acf39369eb00556a0251f12f4ccdd86 *doc/values.Rmd
daabb49ff3ad813a680ec4fe016ad9f3 *doc/values.html
58f833017ad83577c148c2c1e597e132 *extdata/amplicon.bed
b021a04d94a76e4d8609419f929d177b *extdata/amplicon.vcf.gz
fb65422720c8a20dd52b4cb349319df5 *extdata/amplicon.vcf.gz.tbi
08f6f073a2b915f0cce062b75daa8c39 *extdata/amplicon000meth.bam
8a9175527138cb03e08ccbb5eb1be447 *extdata/amplicon010meth.bam
5090d9f275a998bf55b41295e3a9a97a *extdata/amplicon100meth.bam
532c9c5addb7bb3edd980fbe8c51d680 *extdata/capture.bam
8238372c018ccbc0466a6f724fbaa479 *extdata/capture.bed
152066bcc0d8b507efea3a5ae073c000 *extdata/capture.vcf.gz
f0b16c21dcc3c8d56799294862c6c3d7 *extdata/capture.vcf.gz.tbi
33b29026ee19c7d8720719d9e8b70c52 *extdata/longread.bam
eedee46794a999f6f590821b6f428021 *extdata/test/bsmap-pe-namesort-zs.bam
56f6d441dd87609b5199cae6f23dd38b *extdata/test/bsmap-pe-unsort-zs.bam
51e64e3834bfbd4cb8f63bcef10742f9 *extdata/test/bsmap-se-unsort-zs.bam
c730ae0b3d9e8e2c17fa5451286fcfe3 *extdata/test/bwameth-pe-namesort-yd.bam
39b3fe1f5a4caee160fdff98e42a7dec *extdata/test/bwameth-pe-unsort-yd.bam
59ea2d42f1d52689ba1c46a32c073de2 *extdata/test/bwameth-se-unsort-yd.bam
3bd4de272359f2ac18d2e5550a5b69c6 *extdata/test/bwameth-se-unsort.bam
ea45fdb271bd7d05ba62784f111818f2 *extdata/test/dragen-pe-namesort-xg-xm.bam
50bb3ae5e6a6917cbe29b1e3a8011e18 *extdata/test/dragen-pe-namesort-xg.bam
30bbb6967b8566d660e5c165e0673095 *extdata/test/dragen-pe-unsort-xg-xm.bam
e42654051562b1d37a3a881290361d1a *extdata/test/dragen-pe-unsort-xg.bam
bc5d756188832c02da88a55e5c969ee1 *extdata/test/dragen-pe.CX_report.txt.gz
f27b657a8644b7a190758d569a7134ca *extdata/test/dragen-se-unsort-xg-xm.bam
b970b667e937f219c1037bd223174c6c *extdata/test/dragen-se-unsort-xg.bam
958b1ce872a2853895c3b475eddf5815 *extdata/test/dragen-se.CX_report.txt.gz
7f81afe3a9442594661d37749f32d9b5 *extdata/test/empty.bam
50c39c99240cbde64a078c5141b7bd25 *extdata/test/reference.fasta.gz
7c064ec257d0c934b8715dd7b2ff4973 *extdata/test/reference.fasta.gz.fai
7dea362b3fac8e00956a4952a3d4f474 *extdata/test/reference.fasta.gz.gzi
7966570ddba8e7e49f9d4aab73787afc *help/AnIndex
6e412f46e09dcbaf640e7bbd89497854 *help/aliases.rds
120861219ca1a50e0c2b1f5419e57774 *help/epialleleR.rdb
ced5a3e282060637cb4002db557d4cb4 *help/epialleleR.rdx
01a79be5ad4cde33bdb912163fc5ce6a *help/paths.rds
21174379fd33b3867aa4a6a5264ff07c *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
c0285f2ccae170c397176407ccca4942 *libs/x64/epialleleR.dll
a5c17d1e1b9d362071d70c8fc3416807 *libs/x64/symbols.rds
c6488bb9ece988cdd1ae8e7a8a46f5b5 *unitTests/test_callMethylation.R
85652f1a461433aaa354591e0f801cea *unitTests/test_extractPatterns.R
e9563ce5b94f514f1fe345337e6540a5 *unitTests/test_generateBedEcdf.R
37151c55e7b90bc52f30873c49a7d63c *unitTests/test_generateBedReport.R
348fd1fc756857aa7e058e0a79f8e360 *unitTests/test_generateCytosineReport.R
f77c7c2f30907f6d05e1a8ac30b3047e *unitTests/test_generateMhlReport.R
158c1157e9ab7ce6b810ca33c5915c47 *unitTests/test_generateVcfReport.R
3c5a0a9b2910244bee495afd52267c32 *unitTests/test_internals.R
2828c778c4a87a848156c0928ecc005e *unitTests/test_plotPatterns.R
e0b79e9ca015cc7614142e4b4181d6be *unitTests/test_preprocessBam.R
8211b224e9c7328761b03b5e2b548a50 *unitTests/test_preprocessGenome.R
b74fa5f432d9faf62cca3f1580efbf8e *unitTests/test_simulateBam.R
