# Generated by roxygen2: do not edit by hand

export(allSamples)
export(cBioCache)
export(cBioDataPack)
export(cBioPortal)
export(cBioPortalData)
export(clinicalData)
export(copyNumberData)
export(downloadStudy)
export(fetchData)
export(genePanelMolecular)
export(genePanels)
export(geneTable)
export(genericAssayData)
export(genericAssayMeta)
export(getDataByGenes)
export(getGenePanel)
export(getGenePanelMolecular)
export(getSampleInfo)
export(getStudies)
export(loadStudy)
export(molecularData)
export(molecularProfiles)
export(mutationData)
export(queryGeneTable)
export(removePackCache)
export(sampleLists)
export(samplesInSampleLists)
export(searchOps)
export(setCache)
export(structuralVariantData)
export(untarStudy)
exportClasses(cBioPortal)
exportMethods(operations)
import(RTCGAToolbox)
importFrom(AnVIL,
  Service,
  operations
)
importFrom(BiocBaseUtils,
  checkInstalled,
  isScalarCharacter
)
importFrom(BiocFileCache,
  BiocFileCache,
  bfcadd,
  bfccache,
  bfcdownload,
  bfcinfo,
  bfcnew,
  bfcquery,
  bfcremove,
  bfcrpath,
  bfcupdate
)
importFrom(GenomicRanges,makeGRangesListFromDataFrame)
importFrom(MultiAssayExperiment,
  ExperimentList,
  MultiAssayExperiment
)
importFrom(S4Vectors,
  "metadata<-",
  DataFrame,
  SimpleList,
  isSingleString,
  metadata
)
importFrom(Seqinfo,
  "genome<-",
  genome
)
importFrom(SummarizedExperiment,
  "rowData<-",
  SummarizedExperiment,
  rowData
)
importFrom(TCGAutils,
  TCGAbarcode,
  findGRangesCols,
  generateMap
)
importFrom(methods,
  as,
  callNextMethod,
  is,
  new
)
importFrom(readr,
  read_tsv,
  type_convert
)
importFrom(stats,
  na.omit,
  setNames
)
importFrom(utils,
  data,
  download.file,
  untar
)
