Configurable Shiny data-analysis workflows
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Documentation for package ‘MagellanNTK’ version 0.99.34
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A B C D F G I K L M N O P R S T U V misc
-- A --
| Add2History | Get the last validated step before current position. |
| addDatasets | Datasets processing |
| addDatasets-method | Datasets processing |
| AdditionnalCodeForExternalModules | R code to update the 'config' variable of a process module |
-- B --
| BuildData2Send | Builds a vector of data |
-- C --
| call_func | Wrapper to the function 'do.call' |
| choose_dir | Choose a Folder Interactively |
| choose_dir.darwin | Choose a Folder Interactively |
| choose_dir.linux | Choose a Folder Interactively |
| choose_dir.windows | Choose a Folder Interactively |
| Config | Config class definition |
| Config-class | Config class definition |
-- D --
| dataset-processing | Datasets processing |
| default_base_URL | Default variables used in MagellanNTK |
| default_funcs | Default variables used in MagellanNTK |
| default_layout | Default variables used in MagellanNTK |
| default_pos | Global variables |
| default_theme | Default variables used in MagellanNTK |
| default_vars | Default variables used in MagellanNTK |
| default_workflow | Default variables used in MagellanNTK |
| directoryInput | Directory Selection Control |
| Discover_Skipped_Steps | Discover Skipped Steps |
| download_dataset | dl |
| download_dataset_server | dl |
| download_dataset_ui | dl |
-- F --
| file_sep | Choose a Folder Interactively |
| format_DT | format_DT_ui and format_DT_server |
| format_DT_server | format_DT_ui and format_DT_server |
| format_DT_ui | format_DT_ui and format_DT_server |
-- G --
| generic_mod_open_dataset | Change the default functions in 'MagellanNTK' |
| GetExtension | Get file extension |
| GetFirstMandatoryNotValidated | Get the first mandatory step not validated |
| GetHistory | Get the history of an assay |
| GetListDatasets | Get datasets from packages which owns datasets of a given class |
| GetMaxValidated_AllSteps | Get the last validated step |
| GetMaxValidated_BeforePos | Get the last validated step before current position. |
| GetPackageVersion | Get the version of a package installed in the local R distribution |
| Get_AdditionalModule_Core_Code | R code to update the 'config' variable of a process module |
| Get_Code_Declare_rv_custom | R code to update the 'config' variable of a process module |
| Get_Code_Declare_widgets | R code to update the 'config' variable of a process module |
| Get_Code_for_dataOut | R code to update the 'config' variable of a process module |
| Get_Code_for_General_observeEvents | R code to update the 'config' variable of a process module |
| Get_Code_for_ObserveEvent_widgets | R code to update the 'config' variable of a process module |
| Get_Code_for_remoteReset | R code to update the 'config' variable of a process module |
| Get_Code_for_resetting_custom | R code to update the 'config' variable of a process module |
| Get_Code_for_resetting_widgets | R code to update the 'config' variable of a process module |
| Get_Code_for_rv_reactiveValues | R code to update the 'config' variable of a process module |
| Get_Code_Update_Config_Variable | R code to update the 'config' variable of a process module |
| Get_Workflow_Core_Code | R code to update the 'config' variable of a process module |
| globalvariables | Global variables |
-- I --
| initComplete | Initialisation function for DT |
| initialize-method | Config class definition |
| InitializeHistory | Get the last validated step before current position. |
| insertCodeForExternalModules | R code to update the 'config' variable of a process module |
| Insert_Call_to_Config | Insert source code for config() |
| insert_md | insert_md_ui and insert_md_server |
| insert_md_server | insert_md_ui and insert_md_server |
| insert_md_ui | insert_md_ui and insert_md_server |
| Insert_User_Sidebar | Sidebar functions |
| isSubstr | Substring test |
-- K --
| keepDatasets | Datasets processing |
| keepDatasets-method | Datasets processing |
-- L --
| listBrewerPalettes | Global variables |
| lldata | lldata dataset |
| lldata1 | lldata1 dataset |
| lldata12 | lldata12 dataset |
| lldata123 | lldata123 dataset |
-- M --
| MagellanNTK | Main Shiny application |
| magellanNTK | Main Shiny application |
| MagellanNTK_server | Main Shiny application |
| MagellanNTK_ui | Main Shiny application |
| mainapp | mod_main_page_ui and mod_loading_page_server |
| mainapp_server | mod_main_page_ui and mod_loading_page_server |
| mainapp_ui | mod_main_page_ui and mod_loading_page_server |
| module_exists | Checks if a Shiny module is loaded |
| Module_Return_Func | R code to update the 'config' variable of a process module |
| mod_errorModal | A modal window to display messages |
| mod_errorModal_server | A modal window to display messages |
| mod_errorModal_ui | A modal window to display messages |
| mod_err_modal | A modal window to display messages |
| mod_homepage | mod_homepage_ui and mod_homepage_server |
| mod_homepage_server | mod_homepage_ui and mod_homepage_server |
| mod_homepage_ui | mod_homepage_ui and mod_homepage_server |
| mod_insert_md | insert_md_ui and insert_md_server |
| mod_main_page | mod_main_page_ui and mod_loading_page_server |
| mod_modalDialog | Predefined modal with embeded shiny module |
| mod_modalDialog_server | Predefined modal with embeded shiny module |
| mod_modalDialog_ui | Predefined modal with embeded shiny module |
| mod_open_workflow | mod_open_workflow_ui and mod_open_workflow_server |
| mod_popover_for_help | Opens a small tooltip info over a widget. |
| mod_popover_for_help_server | Opens a small tooltip info over a widget. |
| mod_popover_for_help_ui | Opens a small tooltip info over a widget. |
| mod_release_notes | mod_release_notes_ui and mod_release_notes_server |
| mod_release_notes_server | mod_release_notes_ui and mod_release_notes_server |
| mod_release_notes_ui | mod_release_notes_ui and mod_release_notes_server |
| mod_SweetAlert | A shiny app to display a modal |
| mod_sweetAlert | A shiny app to display a modal |
| mod_SweetAlert_server | A shiny app to display a modal |
| mod_SweetAlert_ui | A shiny app to display a modal |
-- N --
| NavPage | Move the position of the cursor |
| nav_pipeline | Shiny module 'nav_pipeline()' |
| nav_pipeline_server | Shiny module 'nav_pipeline()' |
| nav_pipeline_ui | Shiny module 'nav_pipeline()' |
| nav_process | The server() function of the module 'nav_process' |
| nav_process_server | The server() function of the module 'nav_process' |
| nav_process_ui | The server() function of the module 'nav_process' |
| nav_single_process | Shiny module 'nav_single_process()' |
| nav_single_process_server | Shiny module 'nav_single_process()' |
| nav_single_process_ui | Shiny module 'nav_single_process()' |
-- O --
| open_dataset | Change the default functions in 'MagellanNTK' |
| open_dataset_server | Change the default functions in 'MagellanNTK' |
| open_dataset_ui | Change the default functions in 'MagellanNTK' |
| open_workflow | mod_open_workflow_ui and mod_open_workflow_server |
| open_workflow_server | mod_open_workflow_ui and mod_open_workflow_server |
| open_workflow_ui | mod_open_workflow_ui and mod_open_workflow_server |
-- P --
| pkgsRequire | Loads packages |
| process_layout | Layout for workflows |
| process_layout_pipeline | Layout for workflows |
| process_layout_process | Layout for workflows |
-- R --
| readConfigFile | Read pipelines configuration files |
| readDirectoryInput | Read the value of a directoryInput |
| runDirinputExample | Runs a demo app with the code |
-- S --
| SetCurrentPosition | Get the position of the last validated item |
| SetHistory | Standardize names |
| show-method | Prints the content of a 'Config' class |
| sidebars | Sidebar functions |
| source_shinyApp_files | Source ui.R, server.R ang global.R files |
| source_wf_files | Source workflow files |
| stepStatus | Global variables |
-- T --
| timelines | Shiny module for the process timeline |
| timeline_pipeline | Shiny module for the process timeline |
| timeline_pipeline_server | Shiny module for the process timeline |
| timeline_pipeline_ui | Shiny module for the process timeline |
| timeline_process | Shiny module for the process timeline |
| timeline_process_server | Shiny module for the process timeline |
| timeline_process_ui | Shiny module for the process timeline |
| Timestamp | Timestamp in UNIX format. |
| tl_v_next_icon | Global variables |
| ToggleState_NavBtns | Updates the state of navigation buttons |
| ToggleState_Screens | Updates the status of steps in a given range |
| toggleWidget | Hide/show a widget w.r.t a condition. |
-- U --
| updateDirectoryInput | Change the value of a directoryInput on the client |
| UpdateStepsStatus | Update the status of steps in a pipeline nor process. |
| Update_State_Screens | Update the status enabled/disabled of the steps of a pipeline/process |
-- V --
| view_dataset | mod_open_demo_dataset_ui and mod_open_demo_dataset_server |
| view_dataset_server | mod_open_demo_dataset_ui and mod_open_demo_dataset_server |
| view_dataset_ui | mod_open_demo_dataset_ui and mod_open_demo_dataset_server |
-- misc --
| %AND% | Choose a Folder Interactively |