bcb46671f9de67f4c98c54cd2fb7b0a6 *CITATION
54199ffa52990745cb87c71dc25bd9d6 *DESCRIPTION
d7bef1091553b8d404d3cabd025ccbfc *INDEX
380ad172aee63c3cd40a78f45b4a7f7e *Meta/Rd.rds
8bd78fe4d71c3aeb1a0f4982ee51622b *Meta/features.rds
cda008ae1f85d492681028d8164f6dea *Meta/hsearch.rds
1a0ce4d8ba4d240b8b8041e8078b4404 *Meta/links.rds
61754274a2c40a653f72b60d5486b923 *Meta/nsInfo.rds
d17d3e9bc5e356a7a9f80ec22bef4a41 *Meta/package.rds
424ba573338e5f33e6206581cfd9fb34 *Meta/vignette.rds
fc869ee2ea4207aedc3b58907a28f0af *NAMESPACE
f2b014d809547159ad158bb137a77b07 *NEWS
d6c68f1fe41ced6e98a766a3757313da *R/GenomicAlignments
784453413043e0abf319af3c96211a66 *R/GenomicAlignments.rdb
2c24cfd60816f4b744c60fffb1e51d86 *R/GenomicAlignments.rdx
779e0034c6f577700614026cd90a618a *README.md
244300f607fd313bc0f1e12aac6fa8d3 *doc/GenomicAlignmentsIntroduction.R
6e39e7a38e67414501fb32634a4052aa *doc/GenomicAlignmentsIntroduction.Rnw
5ac9a9950530b3a1f8ad5fb8e33516d9 *doc/GenomicAlignmentsIntroduction.pdf
a6b943caa621dee3fe79c33c204ca6f6 *doc/OverlapEncodings.R
9c58fa0e7b75f152edfa9a683e651cdf *doc/OverlapEncodings.Rnw
2fc26124b92fdae9beee25f7043888b1 *doc/OverlapEncodings.pdf
abdff216625c75cdcde9af17016349cf *doc/WorkingWithAlignedNucleotides.R
10c400e5d2948a1b5202e3c387c97990 *doc/WorkingWithAlignedNucleotides.Rmd
1f98894dece015543516553291343d07 *doc/WorkingWithAlignedNucleotides.html
5d0c08f747978c6d65754da534909dd8 *doc/index.html
111d660eb9166747c920a9df9295bfa7 *doc/summarizeOverlaps.R
8d6114b1245e4f25b7db01f3ff3111f5 *doc/summarizeOverlaps.Rnw
5f62e8f0349b968cd6e31be9aa06c07d *doc/summarizeOverlaps.pdf
1c380f8159fda8fad5d0d4902ae9ea23 *extdata/sm_treated1.bam
af83f784077fcced98e3603bb7ad7a4e *extdata/sm_untreated1.bam
10259c85be90a108d689ddb70063ff20 *help/AnIndex
ea43248fb8963188aba56e0358e278c5 *help/GenomicAlignments.rdb
dd5043d17ebee8a78fd986658eec1451 *help/GenomicAlignments.rdx
257eb551593d510df815e61f83c541a7 *help/aliases.rds
661b0027f6ca919e875f4ba44eba6534 *help/paths.rds
2fd7c41ecfed33365b34f852e55f1ff6 *html/00Index.html
ee41876c0116916bb04bcf4fe3e43d78 *html/R.css
007fb8ddcf4833bfdf9d1d9e98723dad *libs/x64/GenomicAlignments.dll
4ef9f3de05e3a027b4fcdfedf7016487 *libs/x64/symbols.rds
a7b36b6b3e11006f2eb35e0c74d36328 *unitTests/test_GAlignments-class.R
154347216f4ba7be01f4202c3981634e *unitTests/test_GAlignmentsList-class.R
4bcd8177a9a9003a0c3a606a332682f5 *unitTests/test_coordinate-mapping-methods.R
6423ceb23b9aa2509a64f02c53ff9f57 *unitTests/test_findSpliceOverlaps-methods.R
50ce35ec47c6be35b91c2cc63b9fdbaa *unitTests/test_intra-range-methods.R
a369c93b31e2e090aba36dcab66fa759 *unitTests/test_readGAlignmentPairs.R
d6c4737a308c9831ecaff1d0bbd842d5 *unitTests/test_readGAlignments.R
9610e31d42cdcec687fb5f4fb264b906 *unitTests/test_readGAlignmentsList.R
fff74f636e12162e8d287c1ff1537716 *unitTests/test_summarizeOverlaps-methods.R
