sangeranalyseR: a suite of functions for the analysis of Sanger sequence data in R

---

Documentation for package ‘sangeranalyseR’ version 1.23.0

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

ChromatogramParam-class	ChromatogramParam
chromatogram_overwrite	Static base-R chromatogram renderer with a corrected color palette.
chromatogram_plotly	Render a Sanger chromatogram as an interactive Plotly widget
generateReport	Method generateReport
generateReportSA	Method generateReportSA
generateReportSA-method	generateReportSA
generateReportSC	Method generateReportSC
generateReportSC-method	generateReportSC
generateReportSR	Method generateReportSR
generateReportSR-method	generateReportSR
globalTrimApp	Launch a global trimming controls dashboard
launchApp	Method launchApp
launchAppSA	Method launchAppSA
launchAppSA-method	launchAppSA
launchAppSC	Method launchAppSC
launchAppSC-method	launchAppSC
MakeBaseCalls	Method MakeBaseCalls
MakeBaseCalls-method	MakeBaseCalls
ObjectResults-class	ObjectResults
primaryAASeqS1	Method primaryAASeqS1
primaryAASeqS1-method	Method primaryAASeqS1
primaryAASeqS2	Method primaryAASeqS2
primaryAASeqS2-method	Method primaryAASeqS2
primaryAASeqS3	Method primaryAASeqS3
primaryAASeqS3-method	Method primaryAASeqS3
qualityBasePlot	Method qualityBasePlot
qualityBasePlot-method	qualityBasePlot
qualityBasePlot-method	qualityBasePlot
QualityReport-class	QualityReport
QualityReport-class-qualityBasePlot	qualityBasePlot
QualityReport-class-updateQualityParam	updateQualityParam
qualityReportData	QualityReport instance
readTable	Method readTable
readTable-method	readTable
readTable-method	readTable
SangerAlignment	SangerAlignment
SangerAlignment-class	SangerAlignment
SangerAlignment-class-generateReportSA	generateReportSA
SangerAlignment-class-launchAppSA	launchAppSA
SangerAlignment-class-updateQualityParam	updateQualityParam
SangerAlignment-class-writeFastaSA	writeFastaSA
sangerAlignmentData	SangerAlignment instance
sangeranalyseR	sangeranalyseR-package
SangerContig	SangerContig
SangerContig-class	SangerContig
SangerContig-class-generateReportSC	generateReportSC
SangerContig-class-launchAppSC	launchAppSC
SangerContig-class-readTable	readTable
SangerContig-class-updateQualityParam	updateQualityParam
SangerContig-class-writeFastaSC	writeFastaSC
sangerContigData	SangerContig instance
SangerRead	SangerRead
SangerRead-class	SangerRead
SangerRead-class-generateReportSR	generateReportSR
SangerRead-class-MakeBaseCalls	MakeBaseCalls
SangerRead-class-qualityBasePlot	qualityBasePlot
SangerRead-class-readTable	readTable
SangerRead-class-updateQualityParam	updateQualityParam
SangerRead-class-writeFastaSR	writeFastaSR
sangerReadFData	SangerRead instance
updateQualityParam	Method updateQualityParam
updateQualityParam-method	updateQualityParam
updateQualityParam-method	updateQualityParam
updateQualityParam-method	updateQualityParam
updateQualityParam-method	updateQualityParam
writeFasta	Method writeFasta
writeFastaSA	Method writeFastaSA
writeFastaSA-method	writeFastaSA
writeFastaSC	Method writeFastaSC
writeFastaSC-method	writeFastaSC
writeFastaSR	Method writeFastaSR
writeFastaSR-method	writeFastaSR