Change history of package podkat:
=================================

The following list highlights the change history of the package.
It only mentions versions in which actual changes have been made
(leaving out automatic version number increments that have been made
within the Bioconductor release cycle without any actual change
of code or documentation).

Version 1.41.1:
- updated DESCRIPTION file to new format (Authors@R)

Version 1.35.1:
- changed e-mail address of maintainer
- updated README.md and formatting of package vignette
- updated CITATION
- updated references in documentation

Version 1.31.1:
- changed arguments in qqplot() method for compatibility with new version of
  the standard function in the 'stats' package (added dummy arguments to
  avoid errors)
- minor adaptations of help pages

Version 1.25.1:
- adjusted NAMESPACE to account for changes in BiocGenerics package

Version 1.23.2:
- updates and documentation to vignette in order to adapt to newer version of
  Illumina's TruSeq DNA Exome library prep kit
- changed default col.names in readRegionsFromBedFile(); corresponding update of
  help page

Version 1.23.1:
- re-created genome data objects (old data objects had become incompatible
  with newer 'BSgenome' version)

Version 1.19.1:
- fix in nullModel() method to ensure compatibility with R 4.0

Version 1.17.3:
- removed change history from package vignette for easier maintenance

Version 1.17.2:
- minor changes to DESCRIPTION file (system requirement GNU make) and src/Makevars

Version 1.17.1:
- changed summary() method for VariantAnnotation class in order to stay
  compatible with print() method in GenomicRanges package
- corresponding minor adaptations in documentation and package vignette

Version 1.15.1:
- changed Rsamtools API to Rhtslib API

Version 1.5.4:
- fix in vignette code that became necessary because of a change in
  the hg38 transcript annotation

Version 1.5.3:
- readRegionsFromBedFile() now allows for including metadata columns
- corresponding changes in documentation
- fix of call to method rowRanges() into suggested package
- fix of citation info file
- fix of inst/NEWS

Version 1.5.2:
- version number bump for technical reasons related to Bioconductor
  build servers

Version 1.5.1:
- version number bump for technical reasons related to Bioconductor
  build servers

Version 1.3.1:
- added missing method readVariantInfo() for signature
  'character', 'GRanges'
- minor streamlining of source code of readGenotypeMatrix()
- corrections of namespace imports

Version 1.1.3:
- further fix of weights() method for signature 'AssocTestResultRanges'

Version 1.1.2:
- fix of weights() method for signature 'AssocTestResultRanges'

Version 1.1.1:
- fix of filterResults() method for signature 'GRanges'

Version 1.0.0:
- first official release as part of Bioconductor 3.1
