Meta-Analysis of Spatial Colocalization in Spatial Omics
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Documentation for package ‘panoramic’ version 0.99.3
Help Pages
| .lohboot_block_weighted | Internal: custom Loh bootstrap with overlap-weighted blocks |
| .spatstat_local_function_info | Internal: local function info (spatstat helper) |
| create_spatial_network | Construct spatial colocalization network from PANORAMIC results |
| panoramic | Run PANORAMIC End-To-End |
| panoramic_analyze | Run PANORAMIC end-to-end, including pooling/meta-analysis |
| panoramic_extract_contrast | Extract PANORAMIC Contrast, Meta, or Spatialstats Tables |
| panoramic_meta_mv | Multilevel Random-Effects Meta-Analysis of PANORAMIC Features |
| panoramic_prepare | Prepare PANORAMIC inputs from a list of SpatialExperiment objects |
| panoramic_simulate_dataset | Simulate a two-group PANORAMIC example dataset |
| panoramic_simulate_spe | Simulate one SpatialExperiment object for PANORAMIC examples |
| panoramic_spatialstats | Compute Pairwise Spatial Statistics for PANORAMIC |
| plot_forest | Forest Plot for PANORAMIC Spatial Colocalization |
| plot_representative_samples | Plot Representative Samples for Significant Differential Hits |
| plot_spatial_network | Plot PANORAMIC spatial colocalization network |
| plot_volcano | Volcano plot for differential spatial colocalization |