.alignmentConfig	dot-alignmentConfig
.bamLocalDataTrackPayload	dot-bamLocalDataTrackPayload
.bamUrlTrackPayload	dot-bamUrlTrackPayload
.bed12Columns	dot-bed12Columns
.bedGraphTrackPayload	dot-bedGraphTrackPayload
.bedGraphUrlTrackPayload	dot-bedGraphUrlTrackPayload
.BedpeInteractionsTrack	BedpeInteractionsTrack-class
.bedpeTrackPayload	dot-bedpeTrackPayload
.bedTrackPayload	dot-bedTrackPayload
.configListTrackPayload	dot-configListTrackPayload
.CramTrack	GenomicAlignmentTrack-class
.cramUrlTrackPayload	dot-cramUrlTrackPayload
.DataFrameAnnotationTrack	igvAnnotationTrack-class
.DataFrameQuantitativeTrack	QuantitativeTrack-class
.extractBamContigs	dot-extractBamContigs
.extractBedContigs	dot-extractBedContigs
.extractCramContigs	dot-extractCramContigs
.extractVcfContigs	dot-extractVcfContigs
.GenomicAlignmentTrack	GenomicAlignmentTrack-class
.getGenomeSpec	dot-getGenomeSpec
.getReferenceContigs	dot-getReferenceContigs
.GFF3Track	GFF3Track-class
.gff3TrackPayload	dot-gff3TrackPayload
.gff3UrlTrackPayload	dot-gff3UrlTrackPayload
.granges2bedGraphTable	dot-granges2bedGraphTable
.granges2bedTable	dot-granges2bedTable
.GRangesAnnotationTrack	igvAnnotationTrack-class
.GRangesQuantitativeTrack	QuantitativeTrack-class
.GWASTrack	GWASTrack-class
.gwasTrackObjectPayload	dot-gwasTrackObjectPayload
.gwasTrackPayload	dot-gwasTrackPayload
.identifyLikelyAssembly	dot-identifyLikelyAssembly
.igvAnnotationTrack	igvAnnotationTrack-class
.normalizeBedColumns	dot-normalizeBedColumns
.normalizeBedGraphColumns	dot-normalizeBedGraphColumns
.normalizeJunctionColumns	dot-normalizeJunctionColumns
.packJunctionAttributes	dot-packJunctionAttributes
.QuantitativeTrack	QuantitativeTrack-class
.registerGenomeSpec	dot-registerGenomeSpec
.registerTrackFile	dot-registerTrackFile
.RemoteAlignmentTrack	GenomicAlignmentTrack-class
.sanitizeAndMergeOptions	dot-sanitizeAndMergeOptions
.sanitizeChromosomeColorMap	dot-sanitizeChromosomeColorMap
.sanitizeTrack	dot-sanitizeTrack
.sanitizeTracks	dot-sanitizeTracks
.segTrackPayload	dot-segTrackPayload
.sendTrack	dot-sendTrack
.serveFileWithHttpRange	dot-serveFileWithHttpRange
.slotsOverConfig	dot-slotsOverConfig
.spliceJunctionTrackPayload	dot-spliceJunctionTrackPayload
.spliceJunctionUrlTrackPayload	dot-spliceJunctionUrlTrackPayload
.stageTrackFile	dot-stageTrackFile
.Track	Track-class
.trackFile	dot-trackFile
.trackPayload	dot-trackPayload
.trackReferenceData	dot-trackReferenceData
.tracksDir	dot-tracksDir
.trackTable	dot-trackTable
.UCSCBedAnnotationTrack	igvAnnotationTrack-class
.UCSCBedGraphQuantitativeTrack	QuantitativeTrack-class
.validateTrackReference	dot-validateTrackReference
.VariantTrack	VariantTrack-class
.vcfTrackPayload	dot-vcfTrackPayload
BedpeInteractionsTrack	BedpeInteractionsTrack-class
BedpeInteractionsTrack-class	BedpeInteractionsTrack-class
checkReferenceCompatibility	checkReferenceCompatibility
CramTrack	GenomicAlignmentTrack-class
CramTrack-class	GenomicAlignmentTrack-class
DataFrameAnnotationTrack	igvAnnotationTrack-class
DataFrameAnnotationTrack-class	igvAnnotationTrack-class
DataFrameQuantitativeTrack	QuantitativeTrack-class
DataFrameQuantitativeTrack-class	QuantitativeTrack-class
display	display
display,GWASTrack-method	display
GenomicAlignmentTrack	GenomicAlignmentTrack-class
GenomicAlignmentTrack-class	GenomicAlignmentTrack-class
getGenomicRegion	showGenomicRegion
getGenomicRegion,ANY-method	showGenomicRegion
getUrl	getUrl
getUrl,GWASTrack-method	getUrl
get_basic_genomes	get_basic_genomes
get_cas_genomes	get_cas_genomes
get_css_genomes	get_css_genomes
get_tracks_dir	get_tracks_dir
GFF3Track	GFF3Track-class
GFF3Track-class	GFF3Track-class
GRangesAnnotationTrack	igvAnnotationTrack-class
GRangesAnnotationTrack-class	igvAnnotationTrack-class
GRangesQuantitativeTrack	QuantitativeTrack-class
GRangesQuantitativeTrack-class	QuantitativeTrack-class
GWASTrack	GWASTrack-class
GWASTrack-class	GWASTrack-class
igvAnnotationTrack	igvAnnotationTrack
igvAnnotationTrack-class	igvAnnotationTrack-class
igvShiny	igvShiny
igvShinyOutput	igvShinyOutput
loadBamTrackFromLocalData	loadBamTrackFromLocalData
loadBamTrackFromLocalFile	loadBamTrackFromLocalFile
loadBamTrackFromURL	loadBamTrackFromURL
loadBedGraphTrack	loadGenomeAnnotationTrack
loadBedGraphTrackFromURL	loadBedGraphTrackFromURL
loadBedTrack	loadBedTrack
loadCramTrackFromLocalData	loadCramTrackFromLocalData
loadCramTrackFromLocalFile	loadCramTrackFromLocalData
loadCramTrackFromURL	loadCramTrackFromURL
loadGenomeAnnotationTrack	loadGenomeAnnotationTrack
loadGFF3TrackFromLocalData	loadGFF3TrackFromLocalData
loadGFF3TrackFromURL	loadGFF3TrackFromURL
loadGwasTrack	loadGwasTrack
loadSEGTrack	loadSEGTrack
loadSegTrack	loadSEGTrack
loadSpliceJunctionTrackFromLocalData	loadSpliceJunctionTrackFromLocalData
loadSpliceJunctionTrackFromURL	loadSpliceJunctionTrackFromURL
loadTrack	loadTrack
loadTrack,BedpeInteractionsTrack-method	loadTrack
loadTrack,CramTrack-method	loadTrack
loadTrack,GenomicAlignmentTrack-method	loadTrack
loadTrack,GFF3Track-method	loadTrack
loadTrack,GWASTrack-method	loadTrack
loadTrack,igvAnnotationTrack-method	loadTrack
loadTrack,list-method	loadTrack
loadTrack,QuantitativeTrack-method	loadTrack
loadTrack,RemoteAlignmentTrack-method	loadTrack
loadTrack,Track-method	loadTrack
loadTrack,VariantTrack-method	loadTrack
loadVcfTrack	loadVcfTrack
parseAndValidateGenomeSpec	parseAndValidateGenomeSpec
QuantitativeTrack	QuantitativeTrack-class
QuantitativeTrack-class	QuantitativeTrack-class
RemoteAlignmentTrack	GenomicAlignmentTrack-class
RemoteAlignmentTrack-class	GenomicAlignmentTrack-class
removeTracksByName	removeTracksByName
removeTracksByName,ANY-method	removeTracksByName
removeUserAddedTracks	removeUserAddedTracks
renderIgvShiny	renderIgvShiny
serveLocalFile	serveLocalFile
show,GWASTrack-method	show
show,Track-method	show-Track
showGenomicRegion	showGenomicRegion
showGenomicRegion,ANY-method	showGenomicRegion
Track	Track-class
Track-class	Track-class
trackInfo	trackInfo
trackInfo,Track-method	trackInfo
trackSize	trackInfo
trackSize,GenomicAlignmentTrack-method	trackInfo
trackSize,GFF3Track-method	trackInfo
trackSize,Track-method	trackInfo
trackSize,VariantTrack-method	trackInfo
UCSCBedAnnotationTrack	igvAnnotationTrack-class
UCSCBedAnnotationTrack-class	igvAnnotationTrack-class
UCSCBedGraphQuantitativeTrack	QuantitativeTrack-class
UCSCBedGraphQuantitativeTrack-class	QuantitativeTrack-class
VariantTrack	VariantTrack-class
VariantTrack-class	VariantTrack-class
