5547c6adcee95ee942257468b5274c669bc589ad570f44607c5007f983d6c6ab 525 CITATION
93897be6b2bc6ba1dbfecd33d93bb5ead6cfa9f9ff5a0f96e20189ce2c130586 1611 DESCRIPTION
4038b1fb96057f297879c3c24db2f8259e901ad9a19662b5787c4dc910fe2e31 1917 INDEX
bd962055342aecf046ffa69eb60216c728bbe4f09762740a19d4f88dd10e53bb 1499 Meta/Rd.rds
b4f074bc0f45cfe56d976c0d67a1453067f4b34693828ed02d674a6641b3e332 123 Meta/features.rds
db6a095d0f326e80cb71eb614200d9188f45a7adc079f39d622d8b98c21030d4 1453 Meta/hsearch.rds
d539f409cd02e60105740fa0bd5bd35c4efb277dab99c9f7318aa71a9758fb85 697 Meta/links.rds
8bd0a33dddaef8d0ab3f1bb8d2b33c1193def0ba0e71c29cee735dd1b7e5a2f5 933 Meta/nsInfo.rds
2b35fd8339776f5927e1ba784a8c7eb90dc3d9052216cdd3082cfe4883e91da8 1582 Meta/package.rds
073a6c85ecf7f460057f3d35d3b453c71da515cf89632719ff0f2fea5ddf0e67 227 Meta/vignette.rds
b1de94d161eff7c8322b56f44b610228f24690c8a60b90ac4f85711088fc93b3 1370 NAMESPACE
b23c31967635242b556f52a21925597a5600b0b3d892ef5592138337630d9952 5719 NEWS.Rd
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/diffHic
ec2a4441a2b9c09497547ad5afe9123ad1ecb85e9de966f5f67c65bc0dd2838b 424463 R/diffHic.rdb
ef5c55e565bee902ade82d0d69088a625de7c907cedeef12ddc03d20df88e1e3 1965 R/diffHic.rdx
214a3e58809c18bfeab8a3468fe2870b756d15f21d875af977c39b3fbe3504c7 902 README.md
252d3b3a45f8b890518dcffe6cf9c1fcb41bf85d1cfae6d7907e691b408a9b47 1669 doc/diffHic.Rnw
63aa3db8521b2890ecd99e43feeaf81d691975b1f394558cd1b84f1f3b150e14 39108 doc/diffHic.pdf
012680d527fe17d407d3987f763e3414009227ea1d64bd0ea619250bfa743800 1337669 doc/diffHicUsersGuide.pdf
c536932878485db21d41e4a78e3f3ce6d2ee720ecea2f116354f23d1e79af566 1636 doc/index.html
dc9c4780f6ea96e2f3957c7e1b173a5ec826366513c7d3bfd7cbc91f77dc8b34 497 exdata/cuts.rds
eed9c474d6aacd0ce15b8c4b54d3ccbadfb9cc155c28281adaa325b87c01a66e 9856 exdata/generator.R
b1abc659ef7092caeacead2344e4169def256327fc7725e753ddf706aa4e64c9 1003 exdata/hic_sort.bam
935495e2622b9225e910f5bfb2e465dab526cea979c93110a04d8bdec5205950 1151 help/AnIndex
802167a92affbb4bdffdaad3ee1eb96b17bd8822fe2fe06c129f82869dd5c62c 527 help/aliases.rds
d2e18d7633a990ad448af454b860e9ba699d1e3e7169ba3dd42c856a7742dd48 162775 help/diffHic.rdb
a8853ebc88aa99fbe6a4b6ee44d39b6c45e801b2aebc4a6e03e2ffae54140b7c 950 help/diffHic.rdx
16a86e905b94bd85cbe241e8488b55624457945a60c99e0d0a0b259898f3026b 509 help/paths.rds
0967bf9027cbb7c96039e82a693c900356f897af915c4ef7b9d6b3a1442c1edd 6812 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
eca08799025da8d3f776ff36ddff54adcb95c0985a67a48639bbe5fb7c893618 1127624 libs/diffHic.so
ecccceb3ffb818fe6ffbf3ad8c9726808b4e33e0f7b725391aaa567d4fb76bd9 19443 libs/symbols.rds
2c4b66904ab55f074ebff3c595d23b1bab9d8e1be40c1db1881f6f14d4c2e4a7 6141 python/iter_map.py
571ac61c65d068c22ab8b94a3a87a9f7aee8ec570e3fb5a716303fbb2a31b09a 10094 python/presplit_map.py
6b790fe2f4f08b4fcffd69a1d3d4a76f37a827dba40143ef737ca3facb155d11 223 tests/run_all_tests.sh
2228c086fd97acc167d4283100b845c64dc67bea57eedb2326e6c3855db9697d 3132 tests/simcounts.R
6c77bfa06ab28e5d386ece6a9aca1b53405fa1283261b7340ea196e75307291e 2173 tests/simsam.R
517c987408e49e10d78fd0a8968ca95b08b320c000f127cc229cef50a9dc1e1e 5203 tests/test-anno.R
0a7db3960992a4817e7fc5762c5122b174ec705e05f4c12411fec79bceb18117 14161 tests/test-anno.Rout.save
1d5369252057f12988f52cb4f66574f4bb6f12197511e6b92312ce62bb051471 3656 tests/test-box.R
fa66f19165d76510531cd117ddec862d48825c9fd59d4d95bc96b9cedc630800 5990 tests/test-box.Rout.save
e2d1149d03396424f2215dfb35ea6fe333457d05740f8ca1c267ffd8ddd61d4e 12698 tests/test-cluster.R
cdd6309804d5a5084fe8e6c1225717ddf75c599396fc8c40ba1f16fd128695f4 20235 tests/test-cluster.Rout.save
37a8528be6ee8ae4f119ccdde6815bce2aa9a5ef0d1532ffa439fa1c61c365db 3849 tests/test-cmmerge.R
b95c3ef969c4818a83e0a204ccace123734a2e0ccc6b087396fbbeb6c00e199a 7729 tests/test-cmmerge.Rout.save
45861174f1dc762015dae8d9f32298dc50ea1b033312384875eb96c26e3508a1 16716 tests/test-connect.R
57c9d878507934453c7b4f5280033e7427b01baa68542c87f21eb46841fd380b 27872 tests/test-connect.Rout.save
9b25f698e35e18f6312ac118c5524f7ee85d1331985f6201191243eccbd8a36c 5734 tests/test-cut.Rout.save
17ca78a3a32ebb8361b417cc95e4e2ab3d0820bc3f0448cbf15fddd4dbb411e7 3924 tests/test-diclust.R
d4fb9fa6cd9700e0808bfba66a972e4a6697598da221936c55e051a4d320cc02 5458 tests/test-diclust.Rout.save
694ebbd8e0f13e1cf808ab142f09b7d67d938627f97d5c5ffb33dd99a1f3bb59 17733 tests/test-dnase.R
6899b50e08336ee79504fc0673f69c772595fa64ce2b1b0e65e6858b4ad4a8d2 27851 tests/test-dnase.Rout.save
9712a926426f77b8d0afec5921787cfd09246f2f280b11e47d5d9c345783a040 4253 tests/test-domains.R
5ed6aadd8978dd81f8b9d73f216bd0682d09c0e39ba78379539d4cc5c360afb5 11549 tests/test-domains.Rout.save
47e65cf1644f4d5fb3b94e6486aa8b6bd80dde55e709d158e546c3b72db7d063 1861 tests/test-empty.R
b6a68ae41aa24150d91e9e40513457f92693630b0ae4b4ff68e72efae883e93c 6252 tests/test-empty.Rout.save
c114fd887a337aa1ba29c603bc5a2fb26b2c8f4862db720d431f44a02f98d5db 6217 tests/test-filter.R
ca83f623b9d36dcfdfa9741216f1df0d8bdd1c80af06afa82089ad622cae34ea 7892 tests/test-filter.Rout.save
c0f83d4052d7508364ae07159a0c7dff9327337e9910175f3f236623c07f0397 33068 tests/test-hic-pair.R
a7fa9fabff59289570141a5212469f1fcc823733f84bfb2e2409d2d35ea5593e 62429 tests/test-hic-pair.Rout.save
719057b65571203ca2838bc3ca2ceeadb7202984aaf0902f884de16d2fca0e96 13690 tests/test-interactions.R
00c5b566ab899394aec830627677bc4e83eab5d0db04891e7fc0caa0da78e60a 52092 tests/test-interactions.Rout.save
52246ef0ccf063bbe627328d5f130e81e763a5cf951ca6e129911c77cd9edca4 5229 tests/test-itercor.R
ad4ce823a73fbbb57fcdcd4cd0e4de0a9bfe7e0a1028509e70a736f9471a4778 8551 tests/test-itercor.Rout.save
8fa16b921efb77457d27f142a5ffcd1f164dcdc29d56748401a63640e6002755 4721 tests/test-margin.R
01b8629e1a5df71548404a994e9df677d593cdd6003c6a13f434650f1c3b7411 9836 tests/test-margin.Rout.save
1ee929cb4c8938b81d4c369186d18bc7f04a77eb560bad128a61090998ba3589 9001 tests/test-neighbor.R
054743957589170a653890734c430fac51d6bdc771e37468957f6c88bf5b0e6d 15874 tests/test-neighbor.Rout.save
4fcb4f7211a83d60979ebab8d40eeff6318ad98dbe84e9572e6ee2d456d7296c 4536 tests/test-pair-manip.R
67f12655b8023740b1e7131fdfc37bd40b3a43b71b60c1da97aa343eec279953 9340 tests/test-pair-manip.Rout.save
6cf67f24362ba5e22c8c8a748b2110b65963994c6b460adb76995c5e8fd19aa8 3122 tests/test-patch.R
c20d46e646a00d42b43db1d9d82d4a2163d901f9453ece71812052235f121f32 10782 tests/test-patch.Rout.save
9a1be8fa7306e91b6e167a75873c60f5767149ecb3515f7d99e6c5e5fb91b0b6 7613 tests/test-prune.R
3d9f9eb3818a4b6f8298239f7639fb65700140fe2e25a4e14921c3846aa96401 11263 tests/test-prune.Rout.save
