chevreulProcess 1.5.0
chevreulProcessR is an open-source statistical environment which can be easily modified
to enhance its functionality via packages. chevreulProcess
is a R package available via the Bioconductor
repository
for packages. R can be installed on any operating system from
CRAN after which you can install
chevreulProcess by using the following commands in your R
session:
if (!requireNamespace("BiocManager", quietly = TRUE)) {
install.packages("BiocManager")
}
BiocManager::install("chevreulProcess")
The chevreulProcess package is designed for single-cell RNA
sequencing data. The functions included within this package are derived from
other packages that have implemented the infrastructure needed for RNA-seq data
processing and analysis. Packages that have been instrumental in the
development of chevreulProcess include,
Biocpkg("SummarizedExperiment") and Biocpkg("scater").
R and Bioconductor have a steep learning curve so it is critical to
learn where to ask for help. The
Bioconductor support site is the main
resource for getting help: remember to use the chevreulProcess tag and check
the older posts.
chevreulProcessThe chevreulProcess package contains functions to preprocess, cluster,
visualize, and perform other analyses on scRNA-seq data. It also contains a
shiny app for easy
visualization and analysis of scRNA data.
chvereul uses SingelCellExperiment (SCE) object type
(from SingleCellExperiment)
to store expression and other metadata from single-cell experiments.
This package features functions capable of:
library("chevreulProcess")
# Load the data
data("small_example_dataset")R session information.
#> R version 4.6.0 Patched (2026-05-01 r89994)
#> Platform: aarch64-apple-darwin23
#> Running under: macOS Tahoe 26.3.1
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#> Matrix products: default
#> BLAS: /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libRblas.0.dylib
#> LAPACK: /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libRlapack.dylib; LAPACK version 3.12.1
#>
#> locale:
#> [1] C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
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#> time zone: America/New_York
#> tzcode source: internal
#>
#> attached base packages:
#> [1] stats4 stats graphics grDevices utils datasets methods
#> [8] base
#>
#> other attached packages:
#> [1] chevreulProcess_1.5.0 scater_1.41.1
#> [3] ggplot2_4.0.3 scuttle_1.23.1
#> [5] SingleCellExperiment_1.35.1 SummarizedExperiment_1.43.0
#> [7] Biobase_2.73.1 GenomicRanges_1.65.0
#> [9] Seqinfo_1.3.0 IRanges_2.47.1
#> [11] S4Vectors_0.51.2 BiocGenerics_0.59.2
#> [13] generics_0.1.4 MatrixGenerics_1.25.0
#> [15] matrixStats_1.5.0 BiocStyle_2.41.0
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#> [3] shape_1.4.6.1 magrittr_2.0.5
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