Automatic Generation of Differential Expression Analyses

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Documentation for package ‘augere.de’ version 0.99.2

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

augere.de-package	augere.de: Automatic Generation of Differential Expression Analyses
augere.de	augere.de: Automatic Generation of Differential Expression Analyses
findSubsetGroups	Subset by groups in contrasts
loadExampleDataset	Load example dataset
processContrastMetadata	Process contrast metadata
processCustomContrasts	Custom contrasts
processCustomDesignMatrix	Create a custom design matrix
processSimpleComparisons	Contrasts for simple comparisons
processSimpleDesignMatrix	Create a simple design matrix
runEdgeR	Differential expression analysis with edgeR
runVoom	Differential expression analysis with voom