Package: VISTA
Type: Package
Title: Visualization and Integrated System for Transcriptomic Analysis
Version: 1.1.5
Authors@R: c(
    person(given = "Chirag", family = "Parsania", email = "chirag.parsania@gmail.com",
           role = c("aut", "cre"), comment = c(ORCID = "0000-0003-4873-2385"))
  )
Description: The VISTA (Visualization and Integrated System for
        Transcriptomic Analysis) platform streamlines differential
        expression workflows by wrapping DESeq2 and edgeR into a
        SummarizedExperiment-based container with consistent metadata.
        The package includes visualization utilities, MSigDB enrichment
        helpers, and optional deconvolution support to simplify
        interactive exploration of RNA-seq experiments.
License: GPL-3
Encoding: UTF-8
Depends: R (>= 4.5.0)
Imports: AnnotationDbi, BiocGenerics, cli, clusterProfiler, colorspace,
        DESeq2, dplyr, edgeR, forcats, ggplot2, ggrepel, GGally,
        ggpubr, grDevices, graphics, grid, matrixStats, methods,
        msigdbr, limma, purrr, rlang, S4Vectors, scales, stats,
        stringr, SummarizedExperiment, tibble, tidyr, tidyselect,
        tools, utils
Suggests: airway, BiocStyle, circlize, ComplexHeatmap, DT,
        EnhancedVolcano, ggpointdensity, ggridges, ggalluvial,
        ggcorrplot, ggrain, ggvenn, enrichplot, knitr, magrittr,
        patchwork, org.Hs.eg.db, org.Mm.eg.db, quarto, rmarkdown, yaml,
        writexl, testthat (>= 3.0.0), uwot, xCell2
URL: https://github.com/cparsania/VISTA,
        https://cparsania.github.io/VISTA/
BugReports: https://github.com/cparsania/VISTA/issues
biocViews: RNASeq, DifferentialExpression, GeneExpression,
        Transcriptomics, Visualization
VignetteBuilder: knitr
Roxygen: list(markdown = TRUE)
RoxygenNote: 7.3.3
LazyData: false
Config/testthat/edition: 3
Config/pak/sysreqs: libcairo2-dev cmake libfontconfig1-dev
        libfreetype6-dev libglpk-dev make libicu-dev libpng-dev
        libuv1-dev libxml2-dev libssl-dev zlib1g-dev
Repository: https://bioc.r-universe.dev
Date/Publication: 2026-08-06 02:47:08 UTC
RemoteUrl: https://github.com/bioc/VISTA
RemoteRef: HEAD
RemoteSha: 1c7803cafc8edf5551c4633d1d96556ba87ffa17
NeedsCompilation: no
Packaged: 2026-08-06 05:01:05 UTC; root
Author: Chirag Parsania [aut, cre] (ORCID:
    <https://orcid.org/0000-0003-4873-2385>)
Maintainer: Chirag Parsania <chirag.parsania@gmail.com>
Built: R 4.6.1; ; 2026-08-06 05:43:53 UTC; unix
