TSENAT-package	TSENAT-package
AllGenerics	AllGenerics
build_analysis	build_analysis
calculate_assumptions	calculate_assumptions
calculate_assumptions,TSENATAnalysis-method	calculate_assumptions
calculate_concordance	calculate_concordance
calculate_concordance,TSENATAnalysis-method	calculate_concordance
calculate_divergence	calculate_divergence
calculate_diversity	calculate_diversity
calculate_effect_sizes	calculate_effect_sizes
calculate_jeo	calculate_jeo
calculate_jis	calculate_jis
calculate_m_estimator	calculate_m_estimator
calculate_sait	calculate_sait
calculate_srh	calculate_srh
effective_length	readcounts
filter_analysis	filter_analysis
metadata,TSENATAnalysis-method	TSENATAnalysis-metadata
metadata<-,TSENATAnalysis-method	TSENATAnalysis-metadata
plot_concordance	plot_concordance
plot_concordance,TSENATAnalysis-method	plot_concordance
plot_divergence_distribution	plot_divergence_distribution
plot_divergence_spectrum	plot_divergence_spectrum
plot_diversity_spectrum	plot_diversity_spectrum
plot_diversity_violin_density	plot_diversity_violin_density
plot_expression	plot_expression
plot_jis_delta	plot_jis_delta
plot_sait	plot_sait
readcounts	readcounts
results	results
se	TSENATAnalysis-se
se,TSENATAnalysis-method	TSENATAnalysis-se
tpm	readcounts
TSENAT	TSENAT
TSENATAnalysis	TSENATAnalysis
TSENATAnalysis-class	TSENATAnalysis-class
TSENAT_config	TSENAT_config
[,TSENATAnalysis,ANY,ANY,ANY-method	TSENATAnalysis-class
