Apache Parquet-based Mass Spectrometry Data Backend
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Documentation for package ‘MsBackendParquet’ version 0.99.8
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| MsBackendParquet-package | Apache Parquet-based MS data backend |
| $<--method | Apache Parquet-based MS data backend |
| addMzPeakArchives | Build a queryable dataset from mzPeak archives |
| backendBpparam-method | Apache Parquet-based MS data backend |
| backendInitialize-method | Apache Parquet-based MS data backend |
| backendMerge-method | Apache Parquet-based MS data backend |
| buildProjection | Build or drop signal projections |
| centroided-method | Apache Parquet-based MS data backend |
| createMsBackendParquetDataset | Create a Parquet dataset from raw MS data or a 'Spectra' object |
| createMzPeakDataset | Build a queryable dataset from mzPeak archives |
| dataStorage-method | Apache Parquet-based MS data backend |
| dropProjection | Build or drop signal projections |
| extractByIndex-method | Apache Parquet-based MS data backend |
| filterContainsMz | Select spectra containing a peak at a given m/z |
| filterDataOrigin-method | Apache Parquet-based MS data backend |
| filterMsLevel-method | Apache Parquet-based MS data backend |
| filterPrecursorMzRange-method | Apache Parquet-based MS data backend |
| filterPrecursorMzValues-method | Apache Parquet-based MS data backend |
| filterRt-method | Apache Parquet-based MS data backend |
| filterSampleData | Select spectra by their run's sample metadata |
| intensity-method | Apache Parquet-based MS data backend |
| intensity<--method | Apache Parquet-based MS data backend |
| invalidateDatasetCache | Read and write an mzStack manifest |
| manifestRuns | Read and write an mzStack manifest |
| MsBackendParquet | Apache Parquet-based MS data backend |
| MsBackendParquet-class | Apache Parquet-based MS data backend |
| mz-method | Apache Parquet-based MS data backend |
| mz<--method | Apache Parquet-based MS data backend |
| mzMLToParquet | Convert mzML (or related) files into a Parquet dataset |
| mzstack-conditions | Typed mzStack error conditions |
| mzstack-manifest | Read and write an mzStack manifest |
| mzstackCondition | Typed mzStack error conditions |
| mzstackError | Typed mzStack error conditions |
| newManifest | Read and write an mzStack manifest |
| peaksData-method | Apache Parquet-based MS data backend |
| peaksVariables-method | Apache Parquet-based MS data backend |
| precScanNum-method | Apache Parquet-based MS data backend |
| readManifest | Read and write an mzStack manifest |
| reset-method | Apache Parquet-based MS data backend |
| runData | Per-run sample metadata |
| runData<- | Per-run sample metadata |
| runVariables | Per-run sample metadata |
| show-method | Apache Parquet-based MS data backend |
| smoothed-method | Apache Parquet-based MS data backend |
| spectraData-method | Apache Parquet-based MS data backend |
| spectraNames-method | Apache Parquet-based MS data backend |
| spectraNames<--method | Apache Parquet-based MS data backend |
| supportsSetBackend-method | Apache Parquet-based MS data backend |
| tic-method | Apache Parquet-based MS data backend |
| uniqueMsLevels-method | Apache Parquet-based MS data backend |
| writeManifest | Read and write an mzStack manifest |
| [-method | Apache Parquet-based MS data backend |