utils::sessionInfo()
## R version 4.6.0 Patched (2026-05-01 r89994)
## Platform: aarch64-apple-darwin23
## Running under: macOS Tahoe 26.3.1
##
## Matrix products: default
## BLAS: /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libRblas.0.dylib
## LAPACK: /Library/Frameworks/R.framework/Versions/4.6/Resources/lib/libRlapack.dylib; LAPACK version 3.12.1
##
## locale:
## [1] C/en_US.UTF-8/en_US.UTF-8/C/en_US.UTF-8/en_US.UTF-8
##
## time zone: America/New_York
## tzcode source: internal
##
## attached base packages:
## [1] stats graphics grDevices utils datasets methods base
##
## other attached packages:
## [1] EpiCompare_1.17.0 BiocStyle_2.41.0
##
## loaded via a namespace (and not attached):
## [1] BiocIO_1.23.3
## [2] bitops_1.0-9
## [3] ggplotify_0.1.3
## [4] filelock_1.0.3
## [5] tibble_3.3.1
## [6] polyclip_1.10-7
## [7] enrichit_0.1.4
## [8] XML_3.99-0.23
## [9] lifecycle_1.0.5
## [10] httr2_1.2.2
## [11] lattice_0.22-9
## [12] MASS_7.3-65
## [13] magrittr_2.0.5
## [14] plotly_4.12.0
## [15] sass_0.4.10
## [16] rmarkdown_2.31
## [17] jquerylib_0.1.4
## [18] yaml_2.3.12
## [19] plotrix_3.8-14
## [20] otel_0.2.0
## [21] ggtangle_0.1.2
## [22] DBI_1.3.0
## [23] RColorBrewer_1.1-3
## [24] lubridate_1.9.5
## [25] abind_1.4-8
## [26] GenomicRanges_1.65.0
## [27] purrr_1.2.2
## [28] BiocGenerics_0.59.2
## [29] RCurl_1.98-1.18
## [30] yulab.utils_0.2.4
## [31] tweenr_2.0.3
## [32] rappdirs_0.3.4
## [33] gdtools_0.5.0
## [34] IRanges_2.47.1
## [35] S4Vectors_0.51.2
## [36] enrichplot_1.33.0
## [37] ggrepel_0.9.8
## [38] tidytree_0.4.7
## [39] ChIPseeker_1.49.0
## [40] codetools_0.2-20
## [41] DelayedArray_0.39.2
## [42] DOSE_4.7.0
## [43] ggforce_0.5.0
## [44] tidyselect_1.2.1
## [45] aplot_0.2.9
## [46] UCSC.utils_1.9.0
## [47] farver_2.1.2
## [48] base64enc_0.1-6
## [49] matrixStats_1.5.0
## [50] stats4_4.6.0
## [51] BiocFileCache_3.3.0
## [52] Seqinfo_1.3.0
## [53] GenomicAlignments_1.49.0
## [54] jsonlite_2.0.0
## [55] systemfonts_1.3.2
## [56] tools_4.6.0
## [57] ggnewscale_0.5.2
## [58] treeio_1.37.0
## [59] TxDb.Hsapiens.UCSC.hg19.knownGene_3.22.1
## [60] Rcpp_1.1.1-1.1
## [61] glue_1.8.1
## [62] SparseArray_1.13.2
## [63] BiocBaseUtils_1.15.1
## [64] xfun_0.57
## [65] MatrixGenerics_1.25.0
## [66] GenomeInfoDb_1.49.0
## [67] dplyr_1.2.1
## [68] withr_3.0.2
## [69] BiocManager_1.30.27
## [70] fastmap_1.2.0
## [71] boot_1.3-32
## [72] caTools_1.18.3
## [73] digest_0.6.39
## [74] mime_0.13
## [75] timechange_0.4.0
## [76] R6_2.6.1
## [77] gridGraphics_0.5-1
## [78] seqPattern_1.45.0
## [79] GO.db_3.23.1
## [80] gtools_3.9.5
## [81] dichromat_2.0-0.1
## [82] RSQLite_3.52.0
## [83] cigarillo_1.3.0
## [84] tidyr_1.3.2
## [85] generics_0.1.4
## [86] fontLiberation_0.1.0
## [87] data.table_1.18.4
## [88] bsplus_0.1.5
## [89] rtracklayer_1.73.0
## [90] httr_1.4.8
## [91] htmlwidgets_1.6.4
## [92] S4Arrays_1.13.0
## [93] scatterpie_0.2.6
## [94] downloadthis_0.5.0
## [95] pkgconfig_2.0.3
## [96] gtable_0.3.6
## [97] blob_1.3.0
## [98] S7_0.2.2
## [99] impute_1.87.0
## [100] XVector_0.53.0
## [101] htmltools_0.5.9
## [102] fontBitstreamVera_0.1.1
## [103] bookdown_0.46
## [104] scales_1.4.0
## [105] Biobase_2.73.1
## [106] png_0.1-9
## [107] ggfun_0.2.0
## [108] knitr_1.51
## [109] tzdb_0.5.0
## [110] reshape2_1.4.5
## [111] rjson_0.2.23
## [112] nlme_3.1-169
## [113] curl_7.1.0
## [114] cachem_1.1.0
## [115] stringr_1.6.0
## [116] BiocVersion_3.24.0
## [117] KernSmooth_2.23-26
## [118] parallel_4.6.0
## [119] AnnotationDbi_1.75.0
## [120] restfulr_0.0.16
## [121] pillar_1.11.1
## [122] grid_4.6.0
## [123] vctrs_0.7.3
## [124] gplots_3.3.0
## [125] tidydr_0.0.6
## [126] dbplyr_2.5.2
## [127] cluster_2.1.8.2
## [128] evaluate_1.0.5
## [129] magick_2.9.1
## [130] tinytex_0.59
## [131] readr_2.2.0
## [132] GenomicFeatures_1.65.0
## [133] cli_3.6.6
## [134] compiler_4.6.0
## [135] Rsamtools_2.29.0
## [136] rlang_1.2.0
## [137] crayon_1.5.3
## [138] labeling_0.4.3
## [139] plyr_1.8.9
## [140] fs_2.1.0
## [141] ggiraph_0.9.6
## [142] stringi_1.8.7
## [143] genomation_1.45.0
## [144] viridisLite_0.4.3
## [145] gridBase_0.4-7
## [146] BiocParallel_1.47.0
## [147] Biostrings_2.81.1
## [148] lazyeval_0.2.3
## [149] GOSemSim_2.39.0
## [150] fontquiver_0.2.1
## [151] Matrix_1.7-5
## [152] BSgenome_1.81.0
## [153] hms_1.1.4
## [154] patchwork_1.3.2
## [155] bit64_4.8.0
## [156] ggplot2_4.0.3
## [157] KEGGREST_1.53.0
## [158] SummarizedExperiment_1.43.0
## [159] AnnotationHub_4.3.0
## [160] igraph_2.3.1
## [161] memoise_2.0.1
## [162] bslib_0.11.0
## [163] ggtree_4.3.0
## [164] bit_4.6.0
## [165] ape_5.8-1