Parse, Expand, Annotate and Visualize KEGG Pathway Networks as Tidy Graphs

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Documentation for package ‘punKEGGer’ version 0.99.65

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

add_kegg_layout	Add KEGG layout coordinates to a tidygraph
annotate_kegg_graph	Annotate a KEGG tidygraph with custom identifiers
combine_kegg_network	Combine KEGG group and relation edges into a tidygraph
create_meta_dict	Create a meta_id-to-annotation dictionary
expand_metagraph	Expand a KEGG tidygraph by unrolling multi-gene metanodes
extract_kegg_nodes	Extract KEGG node information from a KGML file
fetch_kegg_kgml	Fetch a KEGG pathway KGML via KEGGREST
layout_kegg	Extract node layout coordinates from a KEGG KGML file
parse_kegg_groups	Parse KEGG group nodes from a KGML file
parse_kegg_relations_clean	Parse clean KEGG relations from a KGML file
plot_kegg_graph	Visualize a KEGG pathway tidygraph using manual layout