lisaClust: Clustering of Local Indicators of Spatial Association

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Documentation for package ‘lisaClust’ version 1.21.7

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

geom_hatching	hatchingPlot
hatchingPlot	hatchingPlot
inhomLocalK	Calculate the inhomogenous local K function.
lisa	Generate local indicators of spatial association
lisaClust	Use k-means clustering to cluster local indicators of spatial association. For other clustering use lisa.
nameRegions	Name regions by the cell types they are enriched for
regionBoxPlot	Compare the share of each region between groups
regionMap	Plot heatmap of cell type enrichment for lisaClust regions
scale_region	Scale constructor for regions
scale_region_manual	Scale constructor for regions