group_upset             Cross-Sample UpSet: Core vs Unique Taxa per
                        Biological Group (Step 008)
heatmaps_karioCaS       Generate Heatmaps of Taxa Abundance with
                        Extinction Patterns (Step 006)
import_karioCaS         Import Kraken MPA Reports to
                        TreeSummarizedExperiment (Step 001)
kariocas_result         Result of a karioCaS analysis step
reads_per_taxa          Read Cutoff Saturation Analysis & Optimal
                        Minimum Reads (Step 003)
retrieve_selected_taxa
                        Retrieve Selected Taxa with Domain-Specific
                        Thresholds (Step 004)
taxa_resolution         Generate Taxa Resolution Analysis (Step 007)
taxa_retention          Run Confidence Score Retention & Optimization
                        (Step 002)
upset_kariocas          Generate UpSet Plots per Sample and Domain
                        (Step 005)
