Package for handling the import of dose-response data

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Documentation for package ‘gDRimport’ version 1.11.6

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

check_metadata_names	check_metadata_names
convert_LEVEL5_prism_to_gDR_input	Load, convert and process the level 5 PRISM data into a gDR input
convert_LEVEL6_prism_to_gDR_input	Load, convert and process the level 6 PRISM data into a gDR input
convert_MAE_to_PSet	Convert MultiAssayExperiment to TreatmentResponseExperiment
convert_pset_to_df	Convert a PharmacoSet to a data.table that is prepare for input into gDR pipeline
detect_file_format	Detect format of results data
fix_typos_with_reference	Fix typos using reference data
gdr_test_data-class	gDR Test Data object
getPSet	Get PharmacoSet
get_df_from_raw_edited_EnVision_df	Get final results (as a data.table) from raw edited EnVision data.table
get_df_from_raw_unedited_EnVision_df	Get final results (as a data.table) from raw unedited EnVision data.table
get_exception_data	get exception data
get_expected_template_sheets	Get names of the sheets expected in templates xlsx
get_test_D300_data	get test D300 data
get_test_data	get primary test data
get_test_EnVision_data	get test EnVision data
get_test_Tecan_data	get test Tecan data
get_test_tsv_data	get test tsv data
import_D300	Import D300
is_readable_v	is_readable_v Check if all paths in vector are readable
load_data	Load data
load_long_table	Load long table
load_manifest	Load manifest
load_results	Load results
load_results_EnVision	Load EnVision results from xlsx
load_results_Incucyte	Load incucyte results from plain text
load_results_Tecan	Load tecan results from xlsx
load_results_tsv	Load results from tsv
load_templates	Load templates
load_templates_tsv	Load templates from tsv
load_templates_xlsx	Load templates from xlsx
parse_D300_xml	Parse D300
read_excel_to_dt	Read excel file and transorm it into data.table object
save_drug_info_per_well	for each drug create a Gnumber and Concentration information for each well
setEnvForPSet	Adjust environment variables to meet gDR standards
standardize_record_values	standardize_record_values