# TrIdent - Transduction Identification

## Documentation for package ‘TrIdent’ version 1.5.2

- DESCRIPTION file
- User guides, package vignettes and other documentation
- Package NEWS
- Package README

## Help Pages

geneSearch | Search for gene annotations on positively classified contigs
plotTrIdentResults | Plot read coverage graphs of contigs classified as Prophage-like, Sloping, or HighCovNoPattern
specializedTransductionID | Identify potential specialized transduction events on contigs classified as Prophage-like
TrIdentClassifier | Classify contigs as Prophage-like, Sloping, HighCovNoPattern, and NoPattern