# Generated by roxygen2: do not edit by hand

S3method(print,rjmcmcNucleosomes)
S3method(print,rjmcmcNucleosomesBeforeAndAfterPostTreatment)
S3method(print,rjmcmcNucleosomesMerge)
export(mergeAllRDSFilesFromDirectory)
export(mergeRDSFiles)
export(plotNucleosomes)
export(postTreatment)
export(rjmcmc)
export(rjmcmcCHR)
export(segmentation)
importFrom(BiocGenerics,
  end,
  sapply,
  start
)
importFrom(BiocParallel,
  SnowParam,
  bplapply
)
importFrom(GenomicRanges,
  GRanges,
  GRangesList,
  findOverlaps,
  strand
)
importFrom(IRanges,
  IRanges,
  coverage
)
importFrom(Rcpp,evalCpp)
importFrom(S4Vectors,
  isSingleInteger,
  isSingleNumber,
  queryHits,
  runValue,
  splitAsList,
  subjectHits
)
importFrom(Seqinfo,
  Seqinfo,
  genome,
  seqinfo,
  seqlevels,
  seqnames
)
importFrom(consensusSeekeR,findConsensusPeakRegions)
importFrom(grDevices,rainbow)
importFrom(graphics,
  abline,
  legend,
  lines,
  plot,
  points,
  polygon
)
importFrom(methods,is)
importFrom(stats,
  aggregate,
  setNames
)
useDynLib(RJMCMCNucleosomes, .registration = TRUE)
