.validateAnnotateProteinInfoFromIndraInput	dot-validateAnnotateProteinInfoFromIndraInput
annotateProteinInfoFromIndra	annotateProteinInfoFromIndra
backend_capabilities	backend_capabilities
backend_capabilities,IndraBackend-method	backend_capabilities
backend_capabilities,NetworkBackend-method	backend_capabilities
bootstrapTopicModels	bootstrapTopicModels
compareTopicModels	compareTopicModels
convert_ids	convert_ids
convert_ids,IndraBackend-method	convert_ids
convert_ids,NetworkBackend-method	convert_ids
cytoscapeNetwork	cytoscapeNetwork
cytoscapeNetworkOutput	cytoscapeNetworkOutput
decomposeSubnetworkByTopic	decomposeSubnetworkByTopic
decomposeSubnetworkIntoHierarchicalTopics	decomposeSubnetworkIntoHierarchicalTopics
deleteEdgeFromNetwork	deleteEdgeFromNetwork
exportNetworkToHTML	exportNetworkToHTML
filterSubnetworkByContext	filterSubnetworkByContext
filter_by_curation	filter_by_curation
getSubnetworkFromIndra	getSubnetworkFromIndra
get_curations	get_curations
get_curations,IndraBackend-method	get_curations
get_curations,NetworkBackend-method	get_curations
get_entity_properties	get_entity_properties
get_entity_properties,IndraBackend-method	get_entity_properties
get_entity_properties,NetworkBackend-method	get_entity_properties
get_evidence	get_evidence
get_evidence,IndraBackend-method	get_evidence
get_evidence,NetworkBackend-method	get_evidence
get_network	get_network
get_network,IndraBackend,SubnetworkQuery-method	get_network
get_network,NetworkBackend,missing-method	get_network
get_network,NetworkBackend,NetworkQuery-method	get_network
IndraBackend-class	NetworkBackend-class
indra_backend	indra_backend
NetworkBackend-class	NetworkBackend-class
NetworkQuery-class	NetworkQuery-class
network_queries	network_queries
prepare_entities	prepare_entities
previewNetworkInBrowser	previewNetworkInBrowser
print.topicHierarchy	print.topicHierarchy
renderCytoscapeNetwork	renderCytoscapeNetwork
select_entities	select_entities
SubnetworkQuery-class	NetworkQuery-class
subnetwork_query	subnetwork_query
validate_network	validate_network
