1502bff49a1fde2c768e4c67b3f18b20285f751286d36a377a4ba5971e55c617 626 CITATION
0b6ad4c393c726bbdd27764d897fe4a0d5d9ae3761adc025aca1bc111c5b8eb7 4733 DESCRIPTION
eb7ea884be9ac05f9c61ef70d236b0cd79ff1783724c5d6757cea34859ec2ddc 4758 INDEX
7fc6792457cfcfdae58cc2ef3c50e1298035d540cfe99d9f535824c4dc5cb0bd 42 LICENSE
5ccac7a8795b1799a20f3e3974aa1f1eb581a833b067aea2f4181f08c0b9c1fd 2552 Meta/Rd.rds
b4f074bc0f45cfe56d976c0d67a1453067f4b34693828ed02d674a6641b3e332 123 Meta/features.rds
b4db408df8fe5a4b7c16484f2b3dea8e3df7da2bc5244f63b2aa47707304f1e3 2305 Meta/hsearch.rds
366d0abc358413572cfbc1e4d57a6835a5aa2473d08d4bb6309a30e8ac2ba295 989 Meta/links.rds
3e235379a1c293503da9a8a7c9606649d8ba3e5bbb0267bbfe3f208fab86fc55 1545 Meta/nsInfo.rds
36f503d8244a2cef53de00772766eac2593dc807efa9318c657fedfa6596dc04 3851 Meta/package.rds
61f77defaab2a85be63c9cdcf2428f6beebb18d262d9e022db4a89cb195a1aa2 212 Meta/vignette.rds
a237ba7807f1defdbd50206946268d235124244840f71b0444953f0d8a42885d 4068 NAMESPACE
67d57b63c2ae9139b75b36ce27b31d91d95c191b9bb1d1397cfe011ab0f629b5 53824 NEWS.md
570ca456b280cdeb201ef5ebdf22dc8f80092e2c0c68e33c7f73340e420f3759 1058 R/GExPipe
c9126fb091b463cf82b7671bf899d42092e713ec89315ac51a0ac202b1c64ed4 2297516 R/GExPipe.rdb
570574da96478be654e42fefd81e8b4d9a1f8f49778fc20ab6bd860f5956839b 8256 R/GExPipe.rdx
ea16bb5a8137ea15cdfc35868c05b876b5ff5c8a963a5d8c17346fd803d2045b 6806 README.md
07c5f33c382b309e86a67aa4d5b64fab654b82655c7469c9b472a5ebe6b29723 14620 doc/GExPipe.R
2967effb60ffbfb99922679b0066335b687427dd73de0f40daa98805dfeccd16 49278 doc/GExPipe.Rmd
bfd7a0326738a9afd45f76902af13eec3e26d1287f25ea29484bd4691d6100f8 1610546 doc/GExPipe.html
e59382409bd62aaf9f0a9b7223d4224084351e23d2bc10cf852359b1e780b2a9 1372 doc/index.html
3a3fcf9893846b759a55b3368f806fcfc202a00535ee6d57b9efc645aaba93a2 25903 extdata/circbase_circrna_to_symbol.tsv.gz
e33f17140a7ac9f64d97f030b4eaa54ee50ffb53e3b3945c971763f77d7102a8 61989 extdata/vignette-screenshots/step1_download.png
0a8b275deadd607e17835e1819d7459753ba132351139b6083fd40462e467846 11447 extdata/vignette_expression.csv
509b7464c5b909a43beb430d06c6168fe2616652d592881f4962f0da0dab4be7 206 extdata/vignette_sample_metadata.csv
5d895f4992d0ea87befcd59bf05e0f0f4732eb7e02999d7a95edfdb3b77d9d4b 2516 help/AnIndex
d8ca7e119275605409e8fcd2b04ca5d7f877fee5857a8f9e79c993bfc3df3398 87135 help/GExPipe.rdb
31a849fa201c397c12dbdbdd06bb9e38262966c68e6eba0bb7b1929021936122 1453 help/GExPipe.rdx
4f294e873c70980102b8dc8f7a310341b230b87b499a3b71a994341e7a8f44d4 707 help/aliases.rds
4b77708ea9fadcffe1b996ed9377f088947013e209b4344cf127bf9802a7fa26 841 help/paths.rds
a562738a53dc1a1bc2a95d4253a7e7aaa1caaf8ba34bef55a0416129aa5534a9 8254 html/00Index.html
3d290675266eebeba6efff07db879d699843c80bf428f9e71000e2fc6078f5db 2133 html/R.css
18eb9e0ef90815610e427eda175669a81fc9799370f6292aadc2fbd596381a8e 2208 references.bib
48f391f6b2e39cfa1d9bef8a598c1cdbfaa9704ca1404174c2d009033ab329a7 1994 scripts/README-shinytest2.md
998b700b3ff6d4497f47137dd43e9e2a18dc1dcdbf482f0d95be306b98d0acc3 716 scripts/README-vignette-extdata.md
33aa0884904723a49c7124f77041da697226066f21421092b10ae4f515b8e338 1383 scripts/README-vignette-screenshots.md
a3d5ffa0ff08ecc2298ce87bfe983b598d9d8638817476ba7235e3ccc93f53cc 561 scripts/ascii-cleanup-shiny-modules.R
60157c6369c59e8f0e95f80debcc1213675e4c555b9eac02fc855be48ef98cf3 9075 scripts/benchmark-case-study-env-timing-memory.R
c8508a4ceb76e30ecbfbde0309eeb8e00958990e14db2b7340e38166998f16fe 15422 scripts/benchmark-competitor-efficiency-de.R
07d338f20733c6747d571f0ef199567bd60a538dd52ab8c15835a7e04e30ef1a 4898 scripts/benchmark-consensus-vs-standard.R
273a4a30498f0f05fa0497cd36ffd45eb6f03a90215fba5d4449d0c7a5576fef 10478 scripts/benchmark-wgcna-ml-timing.R
71b167538e1e8a9a85e2614ae39958e76120d6197a4295869cbe2618568a58be 6753 scripts/compare-separate-common-vs-merged.py
44d8616631e581a7ec81cf379c3e3a59c83a4b7e63a501a3038363608d280a0e 854 scripts/concordance-check.R
06e677a413061fbffdd87ab748f613b477c9a3fd7266ac96ab772a5ccb805d82 2843 scripts/explain-deseq2-gap.R
234e61ef24d64092531efc9c74bbeb0d46eef634c3fe9a134078b62b6c85a6ff 18819 scripts/export-benchmark-consensus-csvs.R
9ab95e862aba442c5f903f6a202fd5e98b372ab5b9ceabbb8db443b0ee49b812 8063 scripts/export-hub-overlap-genes.R
56a7be053951bdb6a05b5e03b6641e3078232f25fa1c8e2af74b9af4fd3204b5 6715 scripts/fill-limma-baseline-aucs.R
94eda745bc559ca0091b9d92b235c2b6e74b9cb46615d9c412a00cfb6b292712 4234 scripts/fix-external-auc-entrez-map.R
20aad5e19f35190a2ec80c325204abecd523f6c95dde3dc150254283a850a73a 18946 scripts/generate_tool_information_tables.py
3858026480c027310acaa830d8dc2f5fc44ac39025ec267dbceb67d564be96f6 16866 scripts/make-cross-platform-green-flags.R
ddbb11ab55de82e26beb95bd5bf4683f4e3364821850ca273616112c9c144253 1062 scripts/make-supplementary-table-s1.py
4411d0f51788e40a38094f068ece6f6a72136d5039f0e492786c211c9dadfe32 11913 scripts/make-supplementary-table-s2.py
f9af34ccac99bd74c588daa022d0ae4a60d1a7c72d79c3f54dcd7df0ddf913e7 1294 scripts/make-vignette-extdata.R
36096c5e7977a6d9da852292063b1131ae25db2e7e3c5f9fda637b2b38790693 2969 scripts/make-vignette-screenshots.ps1
213d9a9d84a3dc847a05df8af22ef2b046c5d96b002501a2f09acd5ca41f5063 2665 scripts/make-workflow-figure.R
d2481bf300822748c0e67656451cbe0bbf90fa4d175a46c1820bae4d2ccda723 13245 scripts/manual_pipeline_microarray.R
a166bc9fe74f03e0ea604dd514b0439b58d9015b5a6116416ef29c3538c8c827 13743 scripts/manual_pipeline_microarray_multi.R
dafe6906ac36a792e2ad655b301c1cfdef218705564d7f4f49799f32cfdbf620 38708 scripts/manual_pipeline_parallel_rnaseq_microarray.R
050f68641458eb8cfd1997383f8c8684d12906dbd0ac57796d656478fc1ed7f5 14740 scripts/manual_pipeline_rnaseq.R
1df38676814442a8aa52108ce40c10b274c73628d37ac5d0fd09708dd6117a61 15206 scripts/manual_pipeline_rnaseq_multi.R
8ec90e2eb2dd456dd01945cffbb9b916693b6dde6db9a9fa66591b37073110a6 2811 scripts/merge-manual-competitor-degs.R
7b02470aa6c1c76e27f4a170e153c9efed655744a5205a0f952f225f1bf03999 1441 scripts/record-shinytest2-geo.R
a528a7d0d2fb8ae91fb9b23c3d653decd42e4bc30d9aee82a4118d1eb218c1ab 13331 scripts/run-cross-platform-de-comparison.R
e78e7decdbf5bbefdd07ce71adffa415a5832b298a6445a6b27d7427595d1280 8992 scripts/score-cross-platform-checklist.py
11cae931ce3bd47f4ce3bbbb127c8dc885b5e2ae3755cde0b5742e50b7eddfcd 14382 scripts/score-gexpipe-gse-analysis.R
ca563fab2691f0e8713f934a3da23e99de5692de77e1163efa3c720d2f202f04 3394 scripts/summarise-benchmark-log.R
323ad01e639a1c6a052ca834cb4a2cec043ea1660fd7fa6c19be8baa0cd69fee 1926 scripts/sync-vignette-images.ps1
bba169bcd38c89921854ba182a9baac4b0cf6e189c916ba87d217f8e29259dd3 8541 scripts/update_manuscript_docx.py
a8ef6778160fd46c56b045f218c2e145c2b456460c4f26cb30906d4ea81a81c3 6088 scripts/validate-merged-vs-separate-de.R
0348cc0c9dbe5333a6bc17a72a259f94c4ed91fa75e9443a7c12395d9a9c05fe 11977 scripts/validate-rnaseq-gse50760-gse104836.R
a1401c06e32b035270f1a2d924747359e4a96c4d1ff7d4b5235ec79450c6e2b4 8664 scripts/verify-paper-auc-claim.py
acc6c939f018543a90257a65b901f30f9682857c385c7da5ef1b04d02ed27be8 5101 shinyapp/app.R
353b1ed03248d636381f0cbd7fbb095efa74f6f373b1e98ed34d271f140d694f 2076 shinyapp/global.R
ee19659b97acf16ce19ace433b6b9a2aee270fd90f26c6ef4a05503e786a9a2d 338 shinyapp/server.R
6009e2dd5ab0691637a4a4ab106ed731b0acb854d003d4febba88cb4a3692a59 282 shinyapp/ui.R
