EMTscore-package	EMTscore-package
add_EMT_score	add_EMT_score
add_EMT_score_Bulk	add_EMT_score_Bulk
add_EMT_score_multiple	add_EMT_score_multiple
Arrange_plots	Arrange_plots
cell_annotation_file	cell_annotation_file
compute_Signature_score	compute_Signature_score
compute_Signature_score_SingleCell	compute_Signature_score_SingleCell
correlate_sample_scores	correlate_sample_scores
data_for_plot	data_for_plot
data_prepare	data_prepare
EMTscore	EMTscore-package
Execute_AUCell	Execute_AUCell
Execute_AUCell_parallel	Execute_AUCell_parallel
Execute_E_M_plot	Execute_E_M_plot
Execute_GSVA	Execute_GSVA
Execute_GSVA_parallel	Execute_GSVA_parallel
Execute_JAS	Execute_JAS
Execute_JASMINE_parallel	Execute_JASMINE_parallel
Execute_M_dimension_plot	Execute_M_dimension_plot
Execute_nnPCA	Execute_nnPCA
Execute_nnPCA_parallel	Execute_nnPCA_parallel
Execute_SCSE	Execute_SCSE
Execute_SCSE_parallel	Execute_SCSE_parallel
Execute_ssGSEA	Execute_ssGSEA
Execute_ssGSEA_parallel	Execute_ssGSEA_parallel
filter_gmt_by_reference	filter_gmt_by_reference
geneExp	geneExp
GO	GO
MSigDB_Hallmark	MSigDB_Hallmark
nnPCA_Result_EMT	nnPCA_Result_EMT
nnPCA_Result_multiple	nnPCA_Result_multiple
Panchy_et_al_E_signature	Panchy_et_al_E_signature
Panchy_et_al_M_signature	Panchy_et_al_M_signature
plot_EMT_from_objects	plot_EMT_from_objects
plot_heatmap_function	plot_heatmap_function
predict_cluster_labels	predict_cluster_labels
read_gmt	read_gmt
SCSE_Result_EMT	SCSE_Result_EMT
Tan_et_al_cell_line_E_signature	Tan_et_al_cell_line_E_signature
Tan_et_al_cell_line_M_signature	Tan_et_al_cell_line_M_signature
Tan_et_al_tumor_E_signature	Tan_et_al_tumor_E_signature
Tan_et_al_tumor_M_signature	Tan_et_al_tumor_M_signature
write_gmt	write_gmt
