Bioconductor-Friendly Multithreaded BAM Processing

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Documentation for package ‘BamScale’ version 0.99.14

• DESCRIPTION file
• User guides, package vignettes and other documentation
• Package NEWS
• Package README

Help Pages

bam_count	Count BAM records with Bioconductor-compatible filtering
bam_coverage	Per-base coverage, aggregated in C++
bam_coverage_bigwig	Write per-base coverage to a bigWig, computed in C++
bam_read	Fast BAM reading with Bioconductor-compatible arguments
decode_compact_qual	Decode compact BamScale quality output
decode_compact_seq	Decode compact BamScale sequence output
decode_seqqual_compact	Decode compact 'seq' and 'qual' columns in BamScale output
fragment_sizes	Fragment-size distribution, aggregated in C++
mapq_dist	Mapping-quality (MAPQ) distribution, aggregated in C++